miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52755_ptc-miRf10933-akr:pmrd
Length = 74
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 14 agttgcagccagacccaacgctcttgggcttggtgttgcaacaagacctaagaacgttgg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 agttgcagccagacccaacgctcttgggcttggtgttgcaacaagacctaagaacgttgg 15
Query: 74 gtgtggctgaaact 87
||||||||||||||
Sbjct: 14 gtgtggctgaaact 1
>52461_ptc-miRf10639-akr:pmrd
Length = 132
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 13 gagttgcagccagacccaacgctcttgggcttgg 46
||||||||||||||||||||||||||||||||||
Sbjct: 95 gagttgcagccagacccaacgctcttgggcttgg 128
>53969_ptc-miRf12147-akr:pmrd
Length = 101
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 17 tgcagccagacccaacgctcttgggcttgg 46
||||||||||||||||||||||||||||||
Sbjct: 1 tgcagccagacccaacgctcttgggcttgg 30
>53890_ptc-miRf12068-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 15 gttgcagccagacccaacgctcttgggcttggtgttgcaacaagacctaagaacgttggg 74
|||||||||| | |||| |||||||||||||| |||||| | |||| |||| ||||| |
Sbjct: 105 gttgcagccacatccaaggctcttgggcttggagttgcagccagactaaagagcgttgag 46
Query: 75 tgtggctgaaac 86
||||| ||||||
Sbjct: 45 tgtggttgaaac 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4 ttgggtttggagttgcagccagac 27
||||| ||||||||||||||||||
Sbjct: 83 ttgggcttggagttgcagccagac 60
>52404_ptc-miRf10582-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 15 gttgcagccagacccaacgctcttgggcttggtgttgcaacaagacctaagaacgttggg 74
|||||||||| | |||| |||||||||||||| |||||| | |||| |||| ||||| |
Sbjct: 105 gttgcagccacatccaaggctcttgggcttggagttgcagccagactaaagagcgttgag 46
Query: 75 tgtggctgaaac 86
||||| ||||||
Sbjct: 45 tgtggttgaaac 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4 ttgggtttggagttgcagccagac 27
||||| ||||||||||||||||||
Sbjct: 83 ttgggcttggagttgcagccagac 60
>52221_ptc-miRf10399-akr:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 14 agttgcagccagacccaacgctcttggg 41
||||||||||||||||||||||||||||
Sbjct: 138 agttgcagccagacccaacgctcttggg 111
>53033_ptc-miRf11211-akr:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 28 ccaacgctcttgggcttggtgttgcaacaagacctaagaacgttgggtgtggctgaaac 86
|||| |||||||||||||| |||||| | |||| |||| ||||| |||||| ||||||
Sbjct: 3 ccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaac 61
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ttgggtttggagttgcagccagac 27
||||| ||||||||||||||||||
Sbjct: 12 ttgggcttggagttgcagccagac 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 26 acccaacgctcttgggcttggtgttgca 53
|||||||||||||||| ||| |||||||
Sbjct: 116 acccaacgctcttgggtttgttgttgca 89
>52405_ptc-miRf10583-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 28 ccaacgctcttgggcttggtgttgcaacaagacctaagaacgttgggtgtggctgaaac 86
|||| |||||||||||||| |||||| | |||| |||| ||||| |||||| ||||||
Sbjct: 112 ccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaac 54
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4 ttgggtttggagttgcagccagac 27
||||| ||||||||||||||||||
Sbjct: 103 ttgggcttggagttgcagccagac 80
>52152_ptc-miRf10330-akr:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 gttgcagccagacccaacgctcttgg 40
||||||||||||||||| ||||||||
Sbjct: 99 gttgcagccagacccaaggctcttgg 74
