miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01004701.1/71018-70904 3694:Populus
trichocarpa
Length = 115
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 11 tggagttgcagccagacccaacgctcttgggcttggtgttgca 53
||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 18 tggagttgcagccagacccaacgctcttgggtttagtgttgca 60
>RF00779;MIR474;AARH01006732.1/221604-221489 3694:Populus
trichocarpa
Length = 116
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 13 gagttgcagccagacccaacgctcttgggcttgg 46
||||||||||||||||||||||||||||||||||
Sbjct: 20 gagttgcagccagacccaacgctcttgggcttgg 53
>RF00779;MIR474;AARH01025875.1/2555-2453 3694:Populus trichocarpa
Length = 103
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 agttgcagccagacccaacgctcttggg 41
||||||||||||||||||||||||||||
Sbjct: 22 agttgcagccagacccaacgctcttggg 49
>RF00779;MIR474;AARH01002460.1/29391-29490 3694:Populus
trichocarpa
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 2 tgttgggtttggagttgcagccagacccaacgctcttggg 41
||||||||||| |||||||| |||| |||||||||||||
Sbjct: 12 tgttgggtttgacgttgcagctagactcaacgctcttggg 51
>RF00779;MIR474;AC214101.1/22118-22003 3694:Populus trichocarpa
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 4 ttgggtttggagttgcagccagac 27
||||||||||||||||||||||||
Sbjct: 104 ttgggtttggagttgcagccagac 81
>RF00779;MIR474;AARH01006732.1/221524-221573 3694:Populus
trichocarpa
Length = 50
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 25 gacccaacgctcttgggcttgg 46
||||||||||||||||||||||
Sbjct: 50 gacccaacgctcttgggcttgg 29
>RF00779;MIR474;AARH01017174.1/1000-918 3694:Populus trichocarpa
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 4 ttgggtttggagttgcagccagacccaacgctcttggg 41
|||||| ||| ||||||||||||| ||| |||||||||
Sbjct: 10 ttgggtctggtgttgcagccagactcaaggctcttggg 47
