miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 60
Query: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtcttcc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtcttcc 103
>51616_ptc-miR162a:pmrd
Length = 107
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 46
Query: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtcttcc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 tggccaggaagagatcgatgaaccgctgcctccagtgtcttcc 3
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 60
|||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct: 2 ggaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaa 61
Query: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
| |||||| |||||||||||||||||||||||||||||||
Sbjct: 62 tcttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 103
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 1 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 60
|||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct: 2 ggaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaa 61
Query: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
| |||||| |||||||||||||||||||||||||||||||
Sbjct: 62 tcttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 103
>51618_ptc-miR162c:pmrd
Length = 107
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Minus
Query: 1 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 60
|||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct: 105 ggaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaa 46
Query: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
| |||||| |||||||||||||||||||||||||||||||
Sbjct: 45 tcttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 4
>51617_ptc-miR162b:pmrd
Length = 107
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Minus
Query: 1 ggaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaat 60
|||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct: 105 ggaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaa 46
Query: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
| |||||| |||||||||||||||||||||||||||||||
Sbjct: 45 tcttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 4
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 121 bits (61), Expect = 1e-28
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 2 gaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaatt 61
||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||| |
Sbjct: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaat 60
Query: 62 ggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
|||||| |||||||||||||||||||||||||||||||
Sbjct: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 121 bits (61), Expect = 1e-28
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 2 gaagcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaatt 61
||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||| |
Sbjct: 1 gaagcactggatgcagaggtttatcgatcggttcgtgttgttcgtgtaaaacaaaaaaat 60
Query: 62 ggccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
|||||| |||||||||||||||||||||||||||||||
Sbjct: 61 cttcaggaaaagatcgatgaaccgctgcctccagtgtcttc 101
>48493_ghr-miR162a:pmrd
Length = 148
Score = 79.8 bits (40), Expect = 4e-16
Identities = 87/101 (86%), Gaps = 5/101 (4%)
Strand = Plus / Minus
Query: 5 gcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaa----acaaaaaat 60
||||||||||||||||||||||||||| ||||||| ||| ||| || |||| |||
Sbjct: 117 gcgctggatgcagaggtttatcgatcgattcatgtattt-gtgttattctcacaacaaaa 59
Query: 61 tggccaggaagagatcgatgaaccgctgcctccagtgtctt 101
| |||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttctcaggaagagatcgatgaaccgctgcctccagtgtctt 18
>48545_gma-miR162a:pmrd
Length = 102
Score = 75.8 bits (38), Expect = 6e-15
Identities = 84/99 (84%), Gaps = 4/99 (4%)
Strand = Plus / Minus
Query: 4 agcgctggatgcagaggtttatcgatcggttcatgtttttcgtgctaaacaaaaaattgg 63
|||||||||||||||||||||||||||| |||||| || | || ||||||| | |
Sbjct: 97 agcgctggatgcagaggtttatcgatcgattcatggttctgatgttaaacaacgatt--- 41
Query: 64 ccaggaagagatcgatgaaccgctgcctccagtgtcttc 102
||||||||||||||||||||||||| ||||||| ||||
Sbjct: 40 -caggaagagatcgatgaaccgctgcatccagtgacttc 3
>54387_rco-miR162:pmrd
Length = 96
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 64 ccaggaagagatcgatgaaccgctgcctccagtg 97
||||||||||||||||||||||||||||||||||
Sbjct: 34 ccaggaagagatcgatgaaccgctgcctccagtg 1
>48423_cpa-miR162a:pmrd
Length = 109
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 64 ccaggaagagatcgatgaaccgctgcctccagtg 97
||||||||||||||||||||||||||||||||||
Sbjct: 44 ccaggaagagatcgatgaaccgctgcctccagtg 11
>46937_ath-miR162a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 65 caggaagagatcgatgaaccgctgcctccag 95
|||||||||||||||||||||||||||||||
Sbjct: 55 caggaagagatcgatgaaccgctgcctccag 25
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 6 cgctggatgcagaggtttatcgatcggttcatgttttt 43
||||||||||||||||||||||||| |||||| ||||
Sbjct: 111 cgctggatgcagaggtttatcgatctattcatgctttt 74
>54784_vvi-miR162:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 65 caggaagagatcgatgaaccgctgcctccagtgtcttc 102
||||||||||||||||||||||||| ||||||| ||||
Sbjct: 39 caggaagagatcgatgaaccgctgcatccagtgacttc 2
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 cgctggatgcagaggtttatcga 28
|||||||||||||||||||||||
Sbjct: 95 cgctggatgcagaggtttatcga 73
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 agcgctggatgcagaggtttatcgatcg 31
||||||||||||||||||||||||||||
Sbjct: 11 agcgctggatgcagaggtttatcgatcg 38
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 gatcgatgaaccgctgcctccag 95
|||||||||||||||||||||||
Sbjct: 80 gatcgatgaaccgctgcctccag 102
>46938_ath-miR162b:pmrd
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 4 agcgctggatgcagaggtttatcgatcg 31
||||||||||||||||||||||||||||
Sbjct: 103 agcgctggatgcagaggtttatcgatcg 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 gatcgatgaaccgctgcctccag 95
|||||||||||||||||||||||
Sbjct: 34 gatcgatgaaccgctgcctccag 12
>48682_llu-miR162:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcggttcatg 38
|||||||||||||||||||||||| ||||||
Sbjct: 80 ctggatgcagaggtttatcgatcgattcatg 50
>48707_mtr-miR162d:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcggttcatgttt 41
||||||||||||||||||||| || |||||||||
Sbjct: 87 ctggatgcagaggtttatcgaccgattcatgttt 54
>48706_mtr-miR162c:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tggatgcagaggtttatcgatcggttcatgttt 41
|||||||||||||||||||| || |||||||||
Sbjct: 1 tggatgcagaggtttatcgaccgattcatgttt 33
>48705_mtr-miR162b:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 9 tggatgcagaggtttatcgatcggttcatgttt 41
|||||||||||||||||||| || |||||||||
Sbjct: 85 tggatgcagaggtttatcgaccgattcatgttt 53
>48685_lsa-miR162:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 agcgctggatgcagaggtttatcga 28
|||||||||||||||||||||||||
Sbjct: 25 agcgctggatgcagaggtttatcga 1
>48546_gma-miR162m:pmrd
Length = 367
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 agcgctggatgcagaggtttatcga 28
|||||||||||||||||||||||||
Sbjct: 25 agcgctggatgcagaggtttatcga 1
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcg 31
||||||||||||||||||||||||
Sbjct: 163 ctggatgcagaggtttatcgatcg 140
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcga 28
|||||||||||||||||||||
Sbjct: 130 ctggatgcagaggtttatcga 110
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcga 28
|||||||||||||||||||||
Sbjct: 99 ctggatgcagaggtttatcga 79
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcg 31
||||||||||||| ||||||||||
Sbjct: 114 ctggatgcagaggcttatcgatcg 91
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 8 ctggatgcagaggtttatcgatcg 31
||||||||||||| ||||||||||
Sbjct: 124 ctggatgcagaggcttatcgatcg 101
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 72 agatcgatgaaccgctgcctccag 95
|||||||||||||| |||||||||
Sbjct: 24 agatcgatgaaccgatgcctccag 1
