miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53890_ptc-miRf12068-akr:pmrd
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 60
Query: 61 tctggctgcaactccaagcccaagagccttggatgtggctgcaac 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctggctgcaactccaagcccaagagccttggatgtggctgcaac 105
>53033_ptc-miRf11211-akr:pmrd
Length = 116
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 35
Query: 61 tctggctgcaactccaagcccaagagccttggat 94
||||||||||||||||||||||||||||||||||
Sbjct: 34 tctggctgcaactccaagcccaagagccttggat 1
>52405_ptc-miRf10583-akr:pmrd
Length = 112
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 80
Query: 61 tctggctgcaactccaagcccaagagccttgg 92
||||||||||||||||||||||||||||||||
Sbjct: 81 tctggctgcaactccaagcccaagagccttgg 112
>52755_ptc-miRf10933-akr:pmrd
Length = 74
Score = 56.0 bits (28), Expect = 5e-09
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 34 gtttcaaccacactcaacgctctttagtctggctgcaactccaagcccaagagccttgga 93
|||||| |||||| ||||| |||| |||| | |||||| |||||||||||||| ||||
Sbjct: 2 gtttcagccacacccaacgttcttaggtcttgttgcaacaccaagcccaagagcgttggg 61
Query: 94 tgtggctgcaac 105
| ||||||||||
Sbjct: 62 tctggctgcaac 73
>52288_ptc-miRf10466-akr:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 5e-09
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 34 gtttcaaccacactcaacgctctttagtctggctgcaactccaagcccaagagccttgga 93
|||||| |||||| ||||| |||| |||| | |||||| |||||||||||||| ||||
Sbjct: 86 gtttcagccacacccaacgttcttaggtcttgttgcaacaccaagcccaagagcgttggg 27
Query: 94 tgtggctgcaac 105
| ||||||||||
Sbjct: 26 tctggctgcaac 15
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 60 gtctggctgcaactccaagcccaa 83
|||||||||||||||||| |||||
Sbjct: 27 gtctggctgcaactccaaacccaa 4
>54319_ptc-miRf12497-akr:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gttgcagccaaacccaaggttcttggg 27
|||||||||||||||||| ||||||||
Sbjct: 38 gttgcagccaaacccaagattcttggg 12
>53969_ptc-miRf12147-akr:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 49 aacgctctttagtctggctgcaactccaagcccaagagccttggatgtggctgca 103
||||||||| |||||||| ||| |||||||||||||| |||| | ||||||||
Sbjct: 55 aacgctcttgggtctggctacaatgccaagcccaagagcgttgggtctggctgca 1
>52651_ptc-miRf10829-akr:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gttgcagccaaacccaaggttcttggg 27
|||||||||||||||||| ||||||||
Sbjct: 31 gttgcagccaaacccaagattcttggg 5
>52538_ptc-miRf10716-akr:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 gttgcagccaaacccaaggttcttgg 26
|||||||||||||||||| |||||||
Sbjct: 32 gttgcagccaaacccaagattcttgg 7
>52461_ptc-miRf10639-akr:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 60 gtctggctgcaactccaagcccaagagccttggatgtggctgcaac 105
||||||||||||||| ||||||| |||||||| | |||||||||
Sbjct: 109 gtctggctgcaactctgagcccaacagccttgggtccggctgcaac 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 74 ccaagcccaagagccttggatgtggctgcaac 105
|||||||||||||| |||| | ||||||||||
Sbjct: 128 ccaagcccaagagcgttgggtctggctgcaac 97
>52129_ptc-miRf10307-akr:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 gttgcagccaaacccaaggttcttgg 26
|||||||||||||||||| |||||||
Sbjct: 32 gttgcagccaaacccaagattcttgg 7
>53761_ptc-miRf11939-akr:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 gccaaacccaaggttcttggg 27
|||||||||||||||||||||
Sbjct: 32 gccaaacccaaggttcttggg 12
