miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AC214101.1/22118-22003 3694:Populus trichocarpa
Length = 116
Score = 159 bits (80), Expect = 9e-39
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 gttgcagcaaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 81
Query: 61 tctggctgcaactccaagcccaagagccttgg 92
||||||||||||||||| ||||| ||||||||
Sbjct: 82 tctggctgcaactccaaacccaaaagccttgg 113
>RF00779;MIR474;AARH01006732.1/221604-221489 3694:Populus
trichocarpa
Length = 116
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 49 aacgctctttagtctggctgcaactccaagcccaagagccttggatgtggctgcaac 105
||||||||| |||||||| ||| |||||||||||||| |||| | ||||||||||
Sbjct: 78 aacgctcttgggtctggctacaatgccaagcccaagagcgttgggtctggctgcaac 22
>RF00779;MIR474;AARH01002518.1/140771-140688 3694:Populus
trichocarpa
Length = 84
Score = 50.1 bits (25), Expect = 6e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 61 tctggctgcaactccaagcccaagagccttggatgtggctgcaac 105
|||||||||||| |||| ||||||||||||| | ||||||||||
Sbjct: 66 tctggctgcaacgtcaagtccaagagccttgggtttggctgcaac 22
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 gttgcagccaaacccaaggttcttgggcctgacgtt 36
||||||||||||||||||| |||||| | |||||||
Sbjct: 22 gttgcagccaaacccaaggctcttggacttgacgtt 57
>RF00779;MIR474;AARH01003978.1/155334-155436 3694:Populus
trichocarpa
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 60 gtctggctgcaactccaagcccaagagccttgg 92
||||||| ||||||||| |||||||||||||||
Sbjct: 68 gtctggcggcaactccaggcccaagagccttgg 100
>RF00779;MIR474;AARH01003328.1/198960-199072 3694:Populus
trichocarpa
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gttgcagccaaacccaaggttcttgg 26
||||||||||||||||||| ||||||
Sbjct: 86 gttgcagccaaacccaaggctcttgg 111
