miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53033_ptc-miRf11211-akr:pmrd
Length = 116
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 1 ccaacgctcttgggtttgttgttgcagccaaacccaaggttcttgggcctgacgtttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ccaacgctcttgggtttgttgttgcagccaaacccaaggttcttgggcctgacgtttcaa 55
Query: 61 ccacactcaacgctctttagtctggctgcaactccaagcccaagagccttgg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ccacactcaacgctctttagtctggctgcaactccaagcccaagagccttgg 3
>53890_ptc-miRf12068-akr:pmrd
Length = 105
Score = 182 bits (92), Expect = 4e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 21 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 60
Query: 81 tctggctgcaactccaagcccaagagccttgg 112
||||||||||||||||||||||||||||||||
Sbjct: 61 tctggctgcaactccaagcccaagagccttgg 92
>52404_ptc-miRf10582-akr:pmrd
Length = 105
Score = 182 bits (92), Expect = 4e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 21 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgcagccaaacccaaggttcttgggcctgacgtttcaaccacactcaacgctctttag 60
Query: 81 tctggctgcaactccaagcccaagagccttgg 112
||||||||||||||||||||||||||||||||
Sbjct: 61 tctggctgcaactccaagcccaagagccttgg 92
>54319_ptc-miRf12497-akr:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 gttgcagccaaacccaaggttcttggg 47
|||||||||||||||||| ||||||||
Sbjct: 38 gttgcagccaaacccaagattcttggg 12
>52755_ptc-miRf10933-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 54 gtttcaaccacactcaacgctctttagtctggctgcaactccaagcccaagagccttgg 112
|||||| |||||| ||||| |||| |||| | |||||| |||||||||||||| ||||
Sbjct: 2 gtttcagccacacccaacgttcttaggtcttgttgcaacaccaagcccaagagcgttgg 60
>52651_ptc-miRf10829-akr:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 gttgcagccaaacccaaggttcttggg 47
|||||||||||||||||| ||||||||
Sbjct: 31 gttgcagccaaacccaagattcttggg 5
>52288_ptc-miRf10466-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 54 gtttcaaccacactcaacgctctttagtctggctgcaactccaagcccaagagccttgg 112
|||||| |||||| ||||| |||| |||| | |||||| |||||||||||||| ||||
Sbjct: 86 gtttcagccacacccaacgttcttaggtcttgttgcaacaccaagcccaagagcgttgg 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 80 gtctggctgcaactccaagcccaa 103
|||||||||||||||||| |||||
Sbjct: 27 gtctggctgcaactccaaacccaa 4
>52538_ptc-miRf10716-akr:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 gttgcagccaaacccaaggttcttgg 46
|||||||||||||||||| |||||||
Sbjct: 32 gttgcagccaaacccaagattcttgg 7
>52129_ptc-miRf10307-akr:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 gttgcagccaaacccaaggttcttgg 46
|||||||||||||||||| |||||||
Sbjct: 32 gttgcagccaaacccaagattcttgg 7
>53761_ptc-miRf11939-akr:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 27 gccaaacccaaggttcttggg 47
|||||||||||||||||||||
Sbjct: 32 gccaaacccaaggttcttggg 12
>52461_ptc-miRf10639-akr:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 80 gtctggctgcaactccaagcccaagagccttgg 112
||||||||||||||| ||||||| ||||||||
Sbjct: 109 gtctggctgcaactctgagcccaacagccttgg 77
>53969_ptc-miRf12147-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 69 aacgctctttagtctggctgcaactccaagcccaagagccttgg 112
||||||||| |||||||| ||| |||||||||||||| ||||
Sbjct: 55 aacgctcttgggtctggctacaatgccaagcccaagagcgttgg 12
