miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53038_ptc-miRf11216-akr:pmrd
Length = 118
Score = 216 bits (109), Expect = 3e-57
Identities = 115/117 (98%)
Strand = Plus / Minus
Query: 1 atggttggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atggttggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaatt 59
Query: 61 gcttcaaataatgagaatgttggatgcctttgggtgagattgagagcttactcccca 117
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 58 gcttcaaataacgagaatgttggatgcctttgggggagattgagagcttactcccca 2
>52413_ptc-miRf10591-akr:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 7 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 60
Query: 67 aataatgagaatgttggatgcctttgggtgagattgagagcttactcc 114
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aataatgagaatgttggatgcctttgggtgagattgagagcttactcc 108
>53039_ptc-miRf11217-akr:pmrd
Length = 108
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 7 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 49
Query: 67 aataatgagaatgttggatgcctttgggtgagattgagagcttactcc 114
||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 48 aataacgagaatgttggatgcctttgggggagattgagagcttactcc 1
>53040_ptc-miRf11218-akr:pmrd
Length = 99
Score = 180 bits (91), Expect = 2e-46
Identities = 97/99 (97%)
Strand = Plus / Minus
Query: 11 aagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaata 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 aagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaata 40
Query: 71 atgagaatgttggatgcctttgggtgagattgagagctt 109
| |||||||||||||||||||||| ||||||||||||||
Sbjct: 39 acgagaatgttggatgcctttgggggagattgagagctt 1
>51778_ptc-miR477b:pmrd
Length = 85
Score = 168 bits (85), Expect = 6e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 18 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataatgagaa 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataatgagaa 60
Query: 78 tgttggatgcctttgggtgagattg 102
|||||||||||||||||||||||||
Sbjct: 61 tgttggatgcctttgggtgagattg 85
>51777_ptc-miR477a:pmrd
Length = 85
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 18 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataatgagaa 77
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataacgagaa 60
Query: 78 tgttggatgcctttgggtgagattg 102
||||||||||||||||| |||||||
Sbjct: 61 tgttggatgcctttgggggagattg 85
>53115_ptc-miRf11293-akr:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 atggttggagaagctcccaatctccctcagaggcttcc 38
||||||||||||||| || |||||||||| ||||||||
Sbjct: 1 atggttggagaagcttccgatctccctcaaaggcttcc 38
Score = 40.1 bits (20), Expect = 4e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 87 cctttgggtgagattgagagcttactccccat 118
|||||||| ||||| |||||||||||||||||
Sbjct: 74 cctttggg-gagatggagagcttactccccat 104
>52049_ptc-miRf10227-akr:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 atggttggagaagctcccaatctccctcagaggcttcc 38
||||||||||||||| || |||||||||| ||||||||
Sbjct: 1 atggttggagaagcttccgatctccctcaaaggcttcc 38
Score = 40.1 bits (20), Expect = 4e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 87 cctttgggtgagattgagagcttactccccat 118
|||||||| ||||| |||||||||||||||||
Sbjct: 74 cctttggg-gagatggagagcttactccccat 104
>52048_ptc-miRf10226-akr:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 atggttggagaagctcccaatctccctcagaggcttcc 38
||||||||||||||| || |||||||||| ||||||||
Sbjct: 1 atggttggagaagcttccgatctccctcaaaggcttcc 38
Score = 40.1 bits (20), Expect = 4e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 87 cctttgggtgagattgagagcttactccccat 118
|||||||| ||||| |||||||||||||||||
Sbjct: 74 cctttggg-gagatggagagcttactccccat 104
>53963_ptc-miRf12141-akr:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 56 taattgcttcaaataatgagaatgttggatgcc-tttgggtgagattgagagcttactcc 114
|||||||||||| ||||| |||||||||| || |||| | | | |||||||||||||||
Sbjct: 47 taattgcttcaagtaatgggaatgttggaaaccttttgtgggggtttgagagcttactcc 106
Query: 115 ccat 118
||||
Sbjct: 107 ccat 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 1 atggttggagaagctcccaatctccctcagaggcttcca 39
|||||||||||||||||||| |||||||| ||| |||||
Sbjct: 1 atggttggagaagctcccaa-ctccctcaaaggtttcca 38
>53962_ptc-miRf12140-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 taattgcttcaaataatgagaatgttgga 84
|||||||||||| ||||| ||||||||||
Sbjct: 36 taattgcttcaagtaatgggaatgttgga 64
>54893_vvi-miR477:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 caatctccctcagaggcttccaat 41
|||||||||||| |||||||||||
Sbjct: 9 caatctccctcaaaggcttccaat 32
