miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52412_ptc-miRf10590-akr:pmrd
Length = 118
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 66
Query: 61 aataatgagaatgttggatgcctttgggtgagattgagagcttactcc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aataatgagaatgttggatgcctttgggtgagattgagagcttactcc 114
>53039_ptc-miRf11217-akr:pmrd
Length = 108
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 1 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 49
Query: 61 aataatgagaatgttggatgcctttgggtgagattgagagcttactcc 108
||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 48 aataacgagaatgttggatgcctttgggggagattgagagcttactcc 1
>53038_ptc-miRf11216-akr:pmrd
Length = 118
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 1 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ggagaagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttca 53
Query: 61 aataatgagaatgttggatgcctttgggtgagattgagagcttactcc 108
||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 52 aataacgagaatgttggatgcctttgggggagattgagagcttactcc 5
>53040_ptc-miRf11218-akr:pmrd
Length = 99
Score = 180 bits (91), Expect = 1e-46
Identities = 97/99 (97%)
Strand = Plus / Minus
Query: 5 aagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 aagctcccaatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaata 40
Query: 65 atgagaatgttggatgcctttgggtgagattgagagctt 103
| |||||||||||||||||||||| ||||||||||||||
Sbjct: 39 acgagaatgttggatgcctttgggggagattgagagctt 1
>51778_ptc-miR477b:pmrd
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 12 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataatgagaa 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataatgagaa 60
Query: 72 tgttggatgcctttgggtgagattg 96
|||||||||||||||||||||||||
Sbjct: 61 tgttggatgcctttgggtgagattg 85
>51777_ptc-miR477a:pmrd
Length = 85
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 12 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataatgagaa 71
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 caatctccctcagaggcttccaatatctcagtttatagtaattgcttcaaataacgagaa 60
Query: 72 tgttggatgcctttgggtgagattg 96
||||||||||||||||| |||||||
Sbjct: 61 tgttggatgcctttgggggagattg 85
>53963_ptc-miRf12141-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 50 taattgcttcaaataatgagaatgttgga 78
|||||||||||| ||||| ||||||||||
Sbjct: 47 taattgcttcaagtaatgggaatgttgga 75
>53962_ptc-miRf12140-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 50 taattgcttcaaataatgagaatgttgga 78
|||||||||||| ||||| ||||||||||
Sbjct: 36 taattgcttcaagtaatgggaatgttgga 64
>54893_vvi-miR477:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 caatctccctcagaggcttccaat 35
|||||||||||| |||||||||||
Sbjct: 9 caatctccctcaaaggcttccaat 32
