miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51873_ptc-miRf10051-akr:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 tggacgtgtccaggtccaacatggggttaagcgagttggacatggtcacatctaaacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggacgtgtccaggtccaacatggggttaagcgagttggacatggtcacatctaaacccg 60
Query: 61 accgcgtccaaacaaaatgtggggttgggcgtggacacgtcca 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accgcgtccaaacaaaatgtggggttgggcgtggacacgtcca 103
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 atgtggggttgggcgtggacacgtcca 103
|||||||||||||||||||| ||||||
Sbjct: 5 atgtggggttgggcgtggacgcgtcca 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 aatgtggggttgggcgtggacacgtc 101
||||||||||||||||||||| ||||
Sbjct: 70 aatgtggggttgggcgtggacgcgtc 95
>52428_ptc-miRf10606-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 aatgtggggttgggcgtggacacgtc 101
||||||||||||||||||||| ||||
Sbjct: 59 aatgtggggttgggcgtggacgcgtc 84
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 aatgtggggttgggcgtggacacgtc 101
||||||||||||||||||||| ||||
Sbjct: 59 aatgtggggttgggcgtggacgcgtc 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggacgtgtccaggtccaac 20
||||||||||||||||||||
Sbjct: 141 tggacgtgtccaggtccaac 160
>52310_ptc-miRf10488-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 80 tggggttgggcgtggacacgt 100
|||||||||||||||||||||
Sbjct: 38 tggggttgggcgtggacacgt 18
>52011_ptc-miRf10189-akr:pmrd
Length = 165
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 ggggttgggcgtggacacgtc 101
|||||||||||||||||||||
Sbjct: 16 ggggttgggcgtggacacgtc 36
>52009_ptc-miRf10187-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tggacgtgtccaggtccaacatggggtta 29
|||||| ||||||||||||||||| ||||
Sbjct: 19 tggacgcgtccaggtccaacatggagtta 47
>54323_ptc-miRf12501-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tggacgtgtccaggtccaacatgg 24
|||||| |||||||||||||||||
Sbjct: 4 tggacgcgtccaggtccaacatgg 27
>52764_ptc-miRf10942-akr:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 tggacgtgtccaggtccaacatgg 24
|||||| |||||||||||||||||
Sbjct: 97 tggacgcgtccaggtccaacatgg 74
>52728_ptc-miRf10906-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggacgtgtccaggtccaacatggggtt 28
|||||| ||||||||||||||| |||||
Sbjct: 7 tggacgcgtccaggtccaacatagggtt 34
>52213_ptc-miRf10391-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 tggggttgggcgtggacacgtcca 103
||||||||||| ||||||||||||
Sbjct: 52 tggggttgggcatggacacgtcca 75
>51865_ptc-miRf10043-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 tggacgtgtccaggtccaacatgg 24
|||||| |||||||||||||||||
Sbjct: 93 tggacgcgtccaggtccaacatgg 70
>51864_ptc-miRf10042-akr:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 tggacgtgtccaggtccaacatgg 24
|||||| |||||||||||||||||
Sbjct: 91 tggacgcgtccaggtccaacatgg 68
