miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53073_ptc-miRf11251-akr:pmrd
Length = 150
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1 gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 59
Query: 61 gtccacgcccaatctcctgttgggt 85
|||||||||||||||||||||||||
Sbjct: 58 gtccacgcccaatctcctgttgggt 34
>52429_ptc-miRf10607-akr:pmrd
Length = 95
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 65
Query: 61 gtccacgcccaatctcctgttgggt 85
|||||||||||||||||||||||||
Sbjct: 66 gtccacgcccaatctcctgttgggt 90
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 46 gttgggccaagacgcgtccacgcccaatc 74
|||||||| |||||||||||||||||||
Sbjct: 36 gttgggcctggacgcgtccacgcccaatc 8
>53733_ptc-miRf11911-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 56 gacgcgtccacgcccaatctcctgttgg 83
||||||||||||||||| ||| ||||||
Sbjct: 28 gacgcgtccacgcccaacctcgtgttgg 1
>53732_ptc-miRf11910-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 56 gacgcgtccacgcccaatctcctgttgg 83
||||||||||||||||| ||| ||||||
Sbjct: 28 gacgcgtccacgcccaacctcgtgttgg 1
>53953_ptc-miRf12131-akr:pmrd
Length = 120
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 46 gttgggccaagacgcgtccacgcccaa 72
|||||||| |||||||||||||||||
Sbjct: 41 gttgggcctggacgcgtccacgcccaa 15
