miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52479_ptc-miRf10657-akr:pmrd
Length = 101
Score = 161 bits (81), Expect = 1e-40
Identities = 96/101 (95%)
Strand = Plus / Plus
Query: 1 aggaaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaac 60
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 1 aggaaagccgacggacgtaatccgtcagtgaagatgtcggtaaataaatcaccgacgaac 60
Query: 61 tgctaatcacacacagacggaatatgtccgtcggtaaaact 101
|||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 61 tgctaatcacccactgacggaatatgtccgtcggtaaaact 101
>52594_ptc-miRf10772-akr:pmrd
Length = 101
Score = 155 bits (78), Expect = 7e-39
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaaaaaatcaccaacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| |||||||||||||||||
Sbjct: 64 taatcacacaccgacggaatttgtccgtcggtaaaact 101
>52506_ptc-miRf10684-akr:pmrd
Length = 101
Score = 155 bits (78), Expect = 7e-39
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| | |||||||||||||||
Sbjct: 64 taatcacacaccgacggaatgtttccgtcggtaaaact 101
>52674_ptc-miRf10852-akr:pmrd
Length = 103
Score = 147 bits (74), Expect = 2e-36
Identities = 92/98 (93%)
Strand = Plus / Minus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 99 aaagccgacggacgtaatccgtcgatgatgacgtcggtaaaaaaatcaccgacgaacttc 40
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| | |||||||||||||||
Sbjct: 39 taatcacacaccgacggaatttttccgtcggtaaaact 2
>52251_ptc-miRf10429-akr:pmrd
Length = 105
Score = 147 bits (74), Expect = 2e-36
Identities = 92/98 (93%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 6 aaagccgacggacgtaatccgtcgatgatgacgtcggtaaaaaaatcaccgacgaacttc 65
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| | |||||||||||||||
Sbjct: 66 taatcacacaccgacggaatttttccgtcggtaaaact 103
>52057_ptc-miRf10235-akr:pmrd
Length = 101
Score = 143 bits (72), Expect = 3e-35
Identities = 93/100 (93%)
Strand = Plus / Plus
Query: 2 ggaaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaact 61
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |
Sbjct: 2 ggaaagccgacggacgtaatccgtcggtgaagacatcggtaaataaatcaccgatgaaat 61
Query: 62 gctaatcacacacagacggaatatgtccgtcggtaaaact 101
| ||||||||||| |||||||||| |||||||||||||||
Sbjct: 62 ggtaatcacacaccgacggaatatttccgtcggtaaaact 101
>52478_ptc-miRf10656-akr:pmrd
Length = 101
Score = 139 bits (70), Expect = 4e-34
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccgacggacgtattccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| | ||||||||||||||
Sbjct: 64 taatcacacaccgacggaattttgccgtcggtaaaact 101
>52367_ptc-miRf10545-akr:pmrd
Length = 101
Score = 139 bits (70), Expect = 4e-34
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccgacggacgtattccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| ||| |||| | |||||||||||||||
Sbjct: 64 taatcacacaccgacagaatttttccgtcggtaaaact 101
>51973_ptc-miRf10151-akr:pmrd
Length = 101
Score = 139 bits (70), Expect = 4e-34
Identities = 91/98 (92%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccgacggacgtattccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| | | |||||||||||||
Sbjct: 64 taatcacacaccgacggaattttttcgtcggtaaaact 101
>52442_ptc-miRf10620-akr:pmrd
Length = 101
Score = 137 bits (69), Expect = 2e-33
Identities = 93/101 (92%)
Strand = Plus / Plus
Query: 1 aggaaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaac 60
||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 1 aggaaagccgacgaacgtaatccgttggtgatgacgtcggtaaaaaaatcaccgacgaac 60
Query: 61 tgctaatcacacacagacggaatatgtccgtcggtaaaact 101
| |||||||||||| |||||||| |||||||||||||||
Sbjct: 61 ttctaatcacacaccgacggaattgttccgtcggtaaaact 101
>52163_ptc-miRf10341-akr:pmrd
Length = 101
Score = 137 bits (69), Expect = 2e-33
Identities = 93/101 (92%)
Strand = Plus / Plus
Query: 1 aggaaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaac 60
|||||||| |||||||||||||||||||| | ||||| |||||||||||||| ||||||
Sbjct: 1 aggaaagctgacggacgtaatccgtcggttaagacgttggtaaataaatcactgacgaat 60
Query: 61 tgctaatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 agctaatcacacaccgacggaatatgtccgtcggtaaaact 101
>53978_ptc-miRf12156-akr:pmrd
Length = 101
Score = 131 bits (66), Expect = 1e-31
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||| || |||||||||||||||||||||||| |||||||| ||||||| |
Sbjct: 4 aaagccgacggaattattccgtcggtgatgacgtcggtaaaaaaatcaccaacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| |||||||||||||||||
Sbjct: 64 taatcacacaccgacggaatttgtccgtcggtaaaact 101
>53006_ptc-miRf11184-akr:pmrd
Length = 101
Score = 131 bits (66), Expect = 1e-31
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccgacggacttattccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| | ||||||||||||||
Sbjct: 64 taatcacacaccgacggaattttgccgtcggtaaaact 101
>52463_ptc-miRf10641-akr:pmrd
Length = 101
Score = 131 bits (66), Expect = 1e-31
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||| || |||||||||||||||||||||||| |||||||| ||||||| |
Sbjct: 4 aaagccgacggaattattccgtcggtgatgacgtcggtaaaaaaatcaccaacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| |||||||||||||||||
Sbjct: 64 taatcacacaccgacggaatttgtccgtcggtaaaact 101
>51978_ptc-miRf10156-akr:pmrd
Length = 101
Score = 131 bits (66), Expect = 1e-31
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccgacggacttattccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
||||||||||| |||||||| | ||||||||||||||
Sbjct: 64 taatcacacaccgacggaattttgccgtcggtaaaact 101
>51874_ptc-miRf10052-akr:pmrd
Length = 101
Score = 131 bits (66), Expect = 1e-31
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccgacggacgtattccgtcggggatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
|||||| |||| |||||||| | |||||||||||||||
Sbjct: 64 taatcatacaccgacggaatttttccgtcggtaaaact 101
>52641_ptc-miRf10819-akr:pmrd
Length = 99
Score = 129 bits (65), Expect = 4e-31
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 97 aaagccgacggacttaatccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 38
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaac 100
||||||||||| ||||||| ||||||||| |||||
Sbjct: 37 taatcacacaccaacggaatgggtccgtcgggaaaac 1
>51894_ptc-miRf10072-akr:pmrd
Length = 89
Score = 125 bits (63), Expect = 7e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 7 gccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgctaa 66
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 1 gccgacggacgtaatctgtcggggatgacgtcagtaaataaatcaccgacgaacagctaa 60
Query: 67 tcacacacagacggaatatgtcc 89
|||||||| ||||||||||||||
Sbjct: 61 tcacacaccgacggaatatgtcc 83
>52666_ptc-miRf10844-akr:pmrd
Length = 101
Score = 123 bits (62), Expect = 3e-29
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 4 aaagccaacggacgtattccgtcggtgatgacgtcggtaaaaaaatcaccgacgaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
|||||| |||| |||||||| | ||||||||||||||
Sbjct: 64 taatcatacaccgacggaattttgccgtcggtaaaact 101
>52160_ptc-miRf10338-akr:pmrd
Length = 99
Score = 123 bits (62), Expect = 3e-29
Identities = 86/94 (91%)
Strand = Plus / Minus
Query: 7 gccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgctaa 66
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 94 gccgacggacgtaatccgtcggtgatgacatcggtaaaaaaatcaccgacgaacgtctaa 35
Query: 67 tcacacacagacggaatatgtccgtcggtaaaac 100
|||||||| |||||||| | ||| ||||||||||
Sbjct: 34 tcacacaccgacggaatttttccatcggtaaaac 1
>52092_ptc-miRf10270-akr:pmrd
Length = 101
Score = 123 bits (62), Expect = 3e-29
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 4 aaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaactgc 63
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||| |
Sbjct: 4 aaagccgacggacgtattccgtcggggatgacgtcggtaaaaaaatcaccgacaaacttc 63
Query: 64 taatcacacacagacggaatatgtccgtcggtaaaact 101
|||||| |||| |||||||| | |||||||||||||||
Sbjct: 64 taatcatacaccgacggaatttttccgtcggtaaaact 101
>52934_ptc-miRf11112-akr:pmrd
Length = 114
Score = 95.6 bits (48), Expect = 6e-21
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 1 aggaaagccgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacgaac 60
||||||||||||||||||| ||||| ||||| |||||| |||||||||| ||| |||||
Sbjct: 100 aggaaagccgacggacgtattccgttggtgaggacgtcagtaaataaattaccaacgaaa 41
Query: 61 tgctaatcacacacagacggaatatgtccgtcggtaaaac 100
| |||||||| || |||||||||| | ||||||||||||
Sbjct: 40 tcttaatcacataccgacggaatattttcgtcggtaaaac 1
>54224_ptc-miRf12402-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 9 cgacggacgtaatccgtcggtgatgacgtcggtaaataaatcaccgacg 57
|||||||||| ||||||||||| | |||||||||||| |||||||||
Sbjct: 95 cgacggacgtgttccgtcggtgaggccgtcggtaaatatttcaccgacg 47
>53162_ptc-miRf11340-akr:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gacggaatatgtccgtcggtaa 97
||||||||||||||||||||||
Sbjct: 4 gacggaatatgtccgtcggtaa 25
>54007_ptc-miRf12185-akr:pmrd
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 gacggaatatgtccgtcggtaaaa 99
|||||||||| |||||||||||||
Sbjct: 12 gacggaatatttccgtcggtaaaa 35
>53602_ptc-miRf11780-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 8 ccgacggacgtaatccgtcggtgatgacgtcggtaa 43
|||||||||||| | ||||||||| | |||||||||
Sbjct: 94 ccgacggacgtatttcgtcggtgaggccgtcggtaa 59
>53481_ptc-miRf11659-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 gacggaatatgtccgtcggtaaaa 99
|||||||||| |||||||||||||
Sbjct: 11 gacggaatatttccgtcggtaaaa 34
>53143_ptc-miRf11321-akr:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 gacggaatatgtccgtcggtaaaa 99
|||||||||| |||||||||||||
Sbjct: 6 gacggaatatttccgtcggtaaaa 29
>52329_ptc-miRf10507-akr:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 atccgtcggtgatgacgtcggtaa 43
|||||||||||||| |||||||||
Sbjct: 97 atccgtcggtgatgccgtcggtaa 120
>51895_ptc-miRf10073-akr:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 73 acagacggaatatgtccgtcggta 96
||||||||||||||||||| ||||
Sbjct: 81 acagacggaatatgtccgttggta 104
