miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53549_ptc-miRf11727-akr:pmrd
Length = 82
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 114 ggctaaatcatgtggggaagcactgtagctttcatcaca 152
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctaaatcatgtggggaagcactgtagctttcatcaca 39
>53067_ptc-miRf11245-akr:pmrd
Length = 81
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 117 taaatcatgtggggaagcactgtagctttcatcaca 152
|||||||||||| |||||||||||||||||||||||
Sbjct: 4 taaatcatgtggagaagcactgtagctttcatcaca 39
>54334_ptc-miRf12512-akr:pmrd
Length = 73
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatga 30
||||||||||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctccgcatga 71
>52685_ptc-miRf10863-akr:pmrd
Length = 73
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatga 30
||||||||||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctccgcatga 71
>53998_ptc-miRf12176-akr:pmrd
Length = 73
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctccgcatg 70
>53908_ptc-miRf12086-akr:pmrd
Length = 73
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctccgcatg 70
>53123_ptc-miRf11301-akr:pmrd
Length = 153
Score = 58.0 bits (29), Expect = 2e-09
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 103 attacaaataaggctaaatcatgtgggg-aagcactgtagctttc 146
||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct: 105 attacaagtaaggctaaatcatgtggggaaagtactgtagctttc 149
>52905_ptc-miRf11083-akr:pmrd
Length = 73
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctccgcatg 70
>52776_ptc-miRf10954-akr:pmrd
Length = 71
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||||||||||||||||||
Sbjct: 41 tgtggattgctacagtgtctctccgcatg 69
>52041_ptc-miRf10219-akr:pmrd
Length = 155
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 116 ctaaatcatgtggggaagcactgtagctttc 146
||||||||||||||||||||||||| |||||
Sbjct: 121 ctaaatcatgtggggaagcactgtaactttc 151
>53776_ptc-miRf11954-akr:pmrd
Length = 73
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgc 26
||||||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctccgc 67
>54112_ptc-miRf12290-akr:pmrd
Length = 73
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||||||||||||| ||||
Sbjct: 42 tgtggattgctacagtgtctctccacatg 70
>54100_ptc-miRf12278-akr:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||| ||||||||||||||
Sbjct: 49 tgtggattgctacaatgtctctccgcatg 77
>53536_ptc-miRf11714-akr:pmrd
Length = 88
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||||||| ||||||||||
Sbjct: 50 tgtggattgctacagtgtttctccgcatg 78
>54326_ptc-miRf12504-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 8e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 119 aatcatgtggggaa-gcactgtagctttcatcaca 152
|||||||||||||| |||||||||||||| |||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcaca 35
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tggattgctacagtgtctctccgcatg 29
|||||||||| ||||||||||||||||
Sbjct: 44 tggattgctatagtgtctctccgcatg 70
>53979_ptc-miRf12157-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctc 23
|||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctc 64
>53745_ptc-miRf11923-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 8e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 119 aatcatgtggggaa-gcactgtagctttcatcaca 152
|||||||||||||| |||||||||||||| |||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcaca 35
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tggattgctacagtgtctctcc 24
||||||||||||||||||||||
Sbjct: 44 tggattgctacagtgtctctcc 65
>53126_ptc-miRf11304-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 8e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 119 aatcatgtggggaa-gcactgtagctttcatcaca 152
|||||||||||||| |||||||||||||| |||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcaca 35
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctc 23
|||||||||||||||||||||||
Sbjct: 42 tgtggattgctacagtgtctctc 64
>52932_ptc-miRf11110-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 8e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 119 aatcatgtggggaa-gcactgtagctttcatcaca 152
|||||||||||||| |||||||||||||| |||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcaca 35
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 gattgctacagtgtctctccgcatg 29
|||||||||||||||||||| ||||
Sbjct: 46 gattgctacagtgtctctccacatg 70
>53729_ptc-miRf11907-akr:pmrd
Length = 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatga 30
|||||||||||| ||||||||||| |||||
Sbjct: 42 tgtggattgctatagtgtctctccacatga 71
Score = 42.1 bits (21), Expect = 1e-04
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 119 aatcatgtggggaa-gcactgtagctttc 146
|||||||||||||| ||||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttc 29
>53807_ptc-miRf11985-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
||||||||||||||||| |||||| ||||
Sbjct: 42 tgtggattgctacagtggctctccacatg 70
>52756_ptc-miRf10934-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
|||||||||||||||||| ||||| ||||
Sbjct: 42 tgtggattgctacagtgtatctccacatg 70
>51853_ptc-miRf10031-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtggattgctacagtgtctctccgcatg 29
||||||| |||||||||||||||| ||||
Sbjct: 42 tgtggatagctacagtgtctctccacatg 70
>52748_ptc-miRf10926-akr:pmrd
Length = 75
Score = 40.1 bits (20), Expect = 5e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 118 aaatcatgtgggg-aagcactgtagctttcatcaca 152
|||| |||||||| |||||||||||||||| |||||
Sbjct: 1 aaattatgtggggtaagcactgtagctttcctcaca 36
