miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52624_ptc-miRf10802-akr:pmrd
Length = 78
Score = 73.8 bits (37), Expect = 3e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 3 cggaccggcccggtgggtcgacctgggacctggccgacccgggacctggaccg 55
||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct: 11 cggaccggcccggcgggtcgactcgggacccggccgacccgggacctggaccg 63
>53068_ptc-miRf11246-akr:pmrd
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 3 cggaccggcccggtgggtcgacctgggacctggccgacccgggacctggaccgatccggg 62
||||||||||||| ||||||||| |||||| || |||||||| |||||||| ||||||
Sbjct: 74 cggaccggcccggcgggtcgacccgggacccggtcgacccggtggctggaccggtccggg 15
Query: 63 t 63
|
Sbjct: 14 t 14
>54004_ptc-miRf12182-akr:pmrd
Length = 127
Score = 56.0 bits (28), Expect = 6e-09
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 29 gacctggccgacccgggacctggaccgatccgggtaagacaaaagaccggcctaaggaaa 88
|||| |||||||||||| |||||||| | ||||| | ||||||||||| | | | ||
Sbjct: 108 gacccggccgacccgggggctggaccggttcgggtttgtcaaaagaccggtcaatgcaac 49
Query: 89 aaaccggtcaaacccggtcgacccggtgggtcgacccgtg 128
| |||||||||||| |||||||||| ||||| |||||||
Sbjct: 48 gacccggtcaaacccagtcgacccggcgggtcaacccgtg 9
>53498_ptc-miRf11676-akr:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 7 ccggcccggtgggtcgacctgggacctggccgacccgggacctggaccgatccgggtaag 66
||||||||| ||||||||| |||||| || |||||||| |||||||| |||||||
Sbjct: 73 ccggcccggcgggtcgacccgggacccggtcgacccggtggctggaccggtccgggttta 14
Query: 67 acaaaagaccggc 79
| |||||||||||
Sbjct: 13 ataaaagaccggc 1
>52796_ptc-miRf10974-akr:pmrd
Length = 96
Score = 50.1 bits (25), Expect = 4e-07
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 7 ccggcccggtgggtcgacctgggacctggccgacccgggacctggaccgatccgggtaag 66
||||||||| ||||||||| |||||| || |||||||| |||||||| |||||||
Sbjct: 74 ccggcccggcgggtcgacccgggacccggtcgacccggtggctggaccggtccgggttta 15
Query: 67 acaaaagaccggc 79
| |||||||||||
Sbjct: 14 ataaaagaccggc 2
>52391_ptc-miRf10569-akr:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 ctggaccgatccgggtaagacaaaagac 75
|||||||| |||||||||||||||||||
Sbjct: 23 ctggaccggtccgggtaagacaaaagac 50
>53680_ptc-miRf11858-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 92 ccggtcaaacccggtcgacccggtgggtcgacccg 126
||||| ||||||||||||||| | |||||||||||
Sbjct: 37 ccggtgaaacccggtcgacccagcgggtcgacccg 3
>53339_ptc-miRf11517-akr:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 92 ccggtcaaacccggtcgacccggtgggtcgacccg 126
||||| ||||||||||||||||| ||||| |||||
Sbjct: 11 ccggtaaaacccggtcgacccggagggtcaacccg 45
>53054_ptc-miRf11232-akr:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 92 ccggtcaaacccggtcgacccggtgggtcgacccg 126
||||| ||||||| ||||||||| |||||||||||
Sbjct: 42 ccggtgaaacccgatcgacccggcgggtcgacccg 8
>51920_ptc-miRf10098-akr:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 5 gaccggcccggtgggtcgacctgggacctggccgacccgggacctggaccgatccgggt 63
|||||||||||||||||||| |||||| || |||||| | | | |||||| |||||||
Sbjct: 14 gaccggcccggtgggtcgactcgggacccggtcgacccagtagccggaccggtccgggt 72
>52823_ptc-miRf11001-akr:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 92 ccggtcaaacccggtcgacccggtgggtcgaccc 125
|||||||||||||| ||||| || ||||||||||
Sbjct: 52 ccggtcaaacccgggcgacctggcgggtcgaccc 19
>52233_ptc-miRf10411-akr:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 ctggaccgatccgggtaagacaaaagaccg 77
|||||||| ||||| |||||||||||||||
Sbjct: 33 ctggaccggtccggataagacaaaagaccg 62
>54046_ptc-miRf12224-akr:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 7 ccggcccggtgggtcgacctgggacctggccgacccgggacctggaccgatccgggtaag 66
||||||||| |||| ||||||||| | || |||||||| |||||||| |||||||
Sbjct: 73 ccggcccggcgggtagacctgggatccggtcgacccggtggctggaccggtccgggttta 14
Query: 67 acaaaagaccggc 79
| |||||||||||
Sbjct: 13 ataaaagaccggc 1
>53781_ptc-miRf11959-akr:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 17 gggtcgacctgggacctggccgacc 41
|||||||||||||||| ||||||||
Sbjct: 118 gggtcgacctgggacccggccgacc 94
>53405_ptc-miRf11583-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 ggaccggcccggtgggtcgacctgggacc 32
|||||||||||| ||||||||| ||||||
Sbjct: 64 ggaccggcccggcgggtcgacccgggacc 36
>52940_ptc-miRf11118-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 86 aaaaaaccggtcaaacccggtcgacccggtgggtcgacccg 126
||||| ||||| ||||||| || |||||| |||||||||||
Sbjct: 44 aaaaacccggtaaaacccgatcaacccggcgggtcgacccg 4
>52916_ptc-miRf11094-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 7 ccggcccggtgggtcgacctgggacctggccgacccgggacctggaccgatccgggtaag 66
||||||||| ||||||||| |||||| | |||||||| |||||||| |||||||
Sbjct: 73 ccggcccggcgggtcgacccgggacccgatcgacccggtggctggaccggtccgggttta 14
Query: 67 acaaaagaccggc 79
| |||||||||||
Sbjct: 13 ataaaagaccggc 1
>52876_ptc-miRf11054-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 5 gaccggcccggtgggtcgacctgggacctggccgacccggg 45
||||||| ||| ||||||||| | |||| ||||||||||||
Sbjct: 87 gaccggctcggcgggtcgacccgagacccggccgacccggg 47
>51943_ptc-miRf10121-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 86 aaaaaaccggtcaaacccggtcgacccggtgggtcgacccg 126
||||| ||||| ||||||| || |||||| |||||||||||
Sbjct: 44 aaaaacccggtaaaacccgatcaacccggcgggtcgacccg 4
>51942_ptc-miRf10120-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 86 aaaaaaccggtcaaacccggtcgacccggtgggtcgacccg 126
||||| ||||| ||||||| || |||||| |||||||||||
Sbjct: 44 aaaaacccggtaaaacccgatcaacccggcgggtcgacccg 4
>51830_ptc-miRf10008-akr:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 7 ccggcccggtgggtcgacctgggacctgg 35
|||||| |||||||||||| |||||||||
Sbjct: 21 ccggcctggtgggtcgacccgggacctgg 49
