miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52065_ptc-miRf10243-akr:pmrd
Length = 191
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 cttggacttggttgactgccaagtccaagcgttttaggt 39
|||||||||||| |||||||||||||||||| ||||||
Sbjct: 153 cttggacttggtgcactgccaagtccaagcgtattaggt 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 cttggacttggttgactgccaagtccaagcgt 32
||||||||||| ||| |||||||||||||||
Sbjct: 10 cttggacttggcagaccgccaagtccaagcgt 41
>51949_ptc-miRf10127-akr:pmrd
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 137 ttggacttggctaactgccaagttcaag 164
|||||||||||||| |||||||||||||
Sbjct: 28 ttggacttggctaaatgccaagttcaag 1
>52382_ptc-miRf10560-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tggacttggttgactgccaagt 24
||||||||||||||||||||||
Sbjct: 22 tggacttggttgactgccaagt 43
>52082_ptc-miRf10260-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tggacttggttgactgccaagt 24
||||||||||||||||||||||
Sbjct: 22 tggacttggttgactgccaagt 43
>52390_ptc-miRf10568-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 136 cttggacttggctaactgccaagtt 160
||||||||||||| |||||||||||
Sbjct: 65 cttggacttggctgactgccaagtt 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 cttggacttggttgactgccaagt 24
||||||||||| ||||||||||||
Sbjct: 65 cttggacttggctgactgccaagt 88
>51992_ptc-miRf10170-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 120 tgccaaacccacgttccttggacttggctaactgccaagttcaag 164
||||||||||| | |||||||||| ||||| |||||||| ||||
Sbjct: 53 tgccaaacccaagcgccttggactttgctaaatgccaagtccaag 97