miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52065_ptc-miRf10243-akr:pmrd
          Length = 191

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 1   cttggacttggttgactgccaagtccaagcgttttaggt 39
           ||||||||||||  |||||||||||||||||| ||||||
Sbjct: 153 cttggacttggtgcactgccaagtccaagcgtattaggt 191



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 1  cttggacttggttgactgccaagtccaagcgt 32
          |||||||||||  ||| |||||||||||||||
Sbjct: 10 cttggacttggcagaccgccaagtccaagcgt 41




>51949_ptc-miRf10127-akr:pmrd
          Length = 95

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 137 ttggacttggctaactgccaagttcaag 164
           |||||||||||||| |||||||||||||
Sbjct: 28  ttggacttggctaaatgccaagttcaag 1




>52382_ptc-miRf10560-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 3  tggacttggttgactgccaagt 24
          ||||||||||||||||||||||
Sbjct: 22 tggacttggttgactgccaagt 43




>52082_ptc-miRf10260-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 3  tggacttggttgactgccaagt 24
          ||||||||||||||||||||||
Sbjct: 22 tggacttggttgactgccaagt 43




>52390_ptc-miRf10568-akr:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 136 cttggacttggctaactgccaagtt 160
           ||||||||||||| |||||||||||
Sbjct: 65  cttggacttggctgactgccaagtt 89



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  cttggacttggttgactgccaagt 24
          ||||||||||| ||||||||||||
Sbjct: 65 cttggacttggctgactgccaagt 88




>51992_ptc-miRf10170-akr:pmrd
          Length = 131

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 120 tgccaaacccacgttccttggacttggctaactgccaagttcaag 164
           ||||||||||| |  |||||||||| ||||| |||||||| ||||
Sbjct: 53  tgccaaacccaagcgccttggactttgctaaatgccaagtccaag 97