miRNEST 2.0, an integrative microRNA resource :: BLAST
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 337 bits (170), Expect = 2e-93
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72
Query: 61 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 132
Query: 121 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 182
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 234 bits (118), Expect = 2e-62
Identities = 161/173 (93%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72
Query: 61 attcaaacacagtagacaaggagtg-gcag--cggctgctattgtgaatgtgtgaatgac 117
|||||||||||||||| | || | |||| ||||||||||||||||||||||||||
Sbjct: 73 attcaaacacagtagaaattaagggagcagtatggctgctattgtgaatgtgtgaatgat 132
Query: 118 gcgggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gcgggagataaatttcatccttttcttctctgtgcttggactgaagggagctc 185
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 167 bits (84), Expect = 3e-42
Identities = 149/170 (87%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggatgggttaggggtttggattagctgccgactcattc 72
Query: 61 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 120
|||||||||||||||| | | || | | | ||| ||||||||||||||||| |||
Sbjct: 73 attcaaacacagtagaatggaaatg---gagtttactactgtgaatgtgtgaatgatgcg 129
Query: 121 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
|||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 130 ggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctc 179
>40369_rco-MIR319c:mirbase
Length = 188
Score = 161 bits (81), Expect = 2e-40
Identities = 147/167 (88%), Gaps = 4/167 (2%)
Strand = Plus / Plus
Query: 8 cttcagtccactcatggacgggcgaagggtttggattagctgccgactcattcattcaaa 67
||||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||
Sbjct: 14 cttcagtccactcatgggcgggcgaaggttttgaattatctgccgactcattcattcaaa 73
Query: 68 cacagtagacaagg-agtggcagcg---gctgctattgtgaatgtgtgaatgacgcggga 123
|||| |||| |||| || | | ||||||||||||||||||||||||| ||||||
Sbjct: 74 cacactagaaaagggagcattaaagatagctgctattgtgaatgtgtgaatgatgcggga 133
Query: 124 gattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 134 gataaatttcatacttctcttctctgtgcttggactgaagggagctc 180
>40703_mtr-MIR319:mirbase
Length = 207
Score = 111 bits (56), Expect = 2e-25
Identities = 144/170 (84%), Gaps = 5/170 (2%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
||||||||||||||||||||||||| ||| | ||||||| |||| |||| ||||||||
Sbjct: 22 gagcttccttcagtccactcatggaagggtaaggggtttgaattacctgctgactcattg 81
Query: 61 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 120
||||||||||| ||||||| | ||| | ||||||||||||||||||||||| ||
Sbjct: 82 attcaaacacaatagacaatta-tgg--ggttatgctattgtgaatgtgtgaatgatgca 138
Query: 121 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctc 170
|||| | |||||| ||||||||| ||| |||||||||||||||||||||
Sbjct: 139 ggaggtgaatttcttccttttct--tctttgcttggactgaagggagctc 186
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 75.8 bits (38), Expect = 1e-14
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 94 tgctattgtgaatgtgtgaatgacgcgggagattaatttc-atccttttcttctctgtgc 152
||||| ||||| ||||||||||| ||||||||| | |||| ||||| | ||| |||||||
Sbjct: 116 tgctactgtgattgtgtgaatgatgcgggagataattttccatcctctccttttctgtgc 175
Query: 153 ttggactgaagggagctc 170
||||||||||||||||||
Sbjct: 176 ttggactgaagggagctc 193
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tagctgccgactcattcattcaa 66
|||||||||||||||||||||||
Sbjct: 58 tagctgccgactcattcattcaa 80
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 69.9 bits (35), Expect = 6e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaa-gggtttggattagctgccgactcatt 59
||||||||||||| ||||||||||| || ||| ||| ||| ||||||||||||||||||
Sbjct: 14 gagcttccttcagcccactcatggataggagaaaggggttgaattagctgccgactcatt 73
Query: 60 cattcaa 66
|||||||
Sbjct: 74 cattcaa 80
Score = 60.0 bits (30), Expect = 6e-10
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 94 tgctattgtgaatgtgtgaatgacgcgggagattaattt-catccttttcttctctgtgc 152
||||| ||||| ||||||||||| ||||||||| | ||| ||||| | || |||||||
Sbjct: 114 tgctactgtgattgtgtgaatgatgcgggagataattttacatcccctctttttctgtgc 173
Query: 153 ttggactgaagggagctc 170
||||||||||||||||||
Sbjct: 174 ttggactgaagggagctc 191
>40071_ath-MIR319c:mirbase
Length = 199
Score = 52.0 bits (26), Expect = 1e-07
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 101 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 160
|||| ||||||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
Query: 161 aagggagctc 170
||||||||||
Sbjct: 178 aagggagctc 187
>40070_ath-MIR319b:mirbase
Length = 172
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 142 cttctctgtgcttggactgaagggagctc 170
||||||| |||||||||||||||||||||
Sbjct: 141 cttctctatgcttggactgaagggagctc 169
>39859_aly-MIR319b:mirbase
Length = 246
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 142 cttctctgtgcttggactgaagggagctc 170
||||||| |||||||||||||||||||||
Sbjct: 180 cttctctatgcttggactgaagggagctc 208
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
||||||||||||||||||||||||
Sbjct: 145 ctgtgcttggactgaagggagctc 168
Score = 46.1 bits (23), Expect = 9e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||||| ||||||||||||||||| || | ||| || | |||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggatt-gaattagctgccgactcattc 71
Query: 61 attcaaa 67
|| ||||
Sbjct: 72 atccaaa 78
>41282_ctr-MIR319:mirbase
Length = 186
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
||||||||||||||||||||||||
Sbjct: 151 ctgtgcttggactgaagggagctc 174
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
||||||| ||||||||||||||||||||
Sbjct: 400 ttctctgagcttggactgaagggagctc 427
>40466_gma-MIR319c:mirbase
Length = 221
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||||||||||||||||| |||||||
Sbjct: 173 ttctctgtgcttggactgaaaggagctc 200
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 46.1 bits (23), Expect = 9e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||||| ||||||||||||||||| || | ||| ||| |||||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggattta-attagctgccgactcattc 71
Query: 61 attcaaa 67
|| ||||
Sbjct: 72 atccaaa 78
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 154 ctgtacttggactgaagggagctc 177
>40367_rco-MIR319a:mirbase
Length = 211
Score = 46.1 bits (23), Expect = 9e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||||| ||||||||||||||||| || | ||| ||| |||||||||||||||||||
Sbjct: 7 gagctttcttcagtccactcatgggtggcggtaggattta-attagctgccgactcattc 65
Query: 61 attcaaa 67
|| ||||
Sbjct: 66 atccaaa 72
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 180 ctgtacttggactgaagggagctc 203
>42783_zma-MIR319d:mirbase
Length = 212
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ggattagctgccgactcattca 61
||||||||||||||||||||||
Sbjct: 61 ggattagctgccgactcattca 82
>40465_gma-MIR319b:mirbase
Length = 208
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattcaaa 67
||||||||||||||||||||| ||||
Sbjct: 64 attagctgccgactcattcatccaaa 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 164 ctgtacttggactgaagggagctc 187
>40464_gma-MIR319a:mirbase
Length = 207
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattcaaa 67
||||||||||||||||||||| ||||
Sbjct: 63 attagctgccgactcattcatccaaa 88
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatgg 24
|||||| |||||||||||||||||
Sbjct: 23 gagctttcttcagtccactcatgg 46
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 163 ctgtacttggactgaagggagctc 186
>39861_aly-MIR319d:mirbase
Length = 267
Score = 44.1 bits (22), Expect = 3e-05
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 101 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 160
|||| ||| ||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 153 gtgactgtatgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 211
Query: 161 aagggagctc 170
||||||||||
Sbjct: 212 aagggagctc 221
>39860_aly-MIR319c:mirbase
Length = 271
Score = 44.1 bits (22), Expect = 3e-05
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 101 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 160
|||| ||| ||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 153 gtgactgtatgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 211
Query: 161 aagggagctc 170
||||||||||
Sbjct: 212 aagggagctc 221
>42642_tae-MIR319:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 150 tgcttggactgaagggagctc 170
|||||||||||||||||||||
Sbjct: 181 tgcttggactgaagggagctc 201
>41995_osa-MIR319b:mirbase
Length = 197
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
|||| ||||||||||||||||||| ||| |||| | | |||||||||||||||||||
Sbjct: 14 gagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactcattc 72
Query: 61 a 61
|
Sbjct: 73 a 73
>41770_bdi-MIR319:mirbase
Length = 280
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 150 tgcttggactgaagggagctc 170
|||||||||||||||||||||
Sbjct: 223 tgcttggactgaagggagctc 243
>41185_aqc-MIR319:mirbase
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 110 tgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactgaagggagct 169
||||||| ||||||||||||| ||| | | ||||| ||| ||||||||||||||||||
Sbjct: 113 tgaatgatccgggagattaattggatcttatgcttct-tgtacttggactgaagggagct 171
Query: 170 c 170
|
Sbjct: 172 c 172
>42782_zma-MIR319c:mirbase
Length = 216
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattca 65
||||||||||||||||| ||||||
Sbjct: 63 attagctgccgactcatccattca 86
>42781_zma-MIR319b:mirbase
Length = 213
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattca 61
||||||||||||||||||||
Sbjct: 64 attagctgccgactcattca 83
>42780_zma-MIR319a:mirbase
Length = 209
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattca 65
||||||||||||||||| ||||||
Sbjct: 63 attagctgccgactcatccattca 86
>42564_sbi-MIR319b:mirbase
Length = 179
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattcattca 65
||||||||||||||||| ||||||
Sbjct: 43 attagctgccgactcatccattca 66
>42563_sbi-MIR319:mirbase
Length = 249
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 attagctgccgactcattca 61
||||||||||||||||||||
Sbjct: 76 attagctgccgactcattca 95
>41544_sly-MIR319:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 147 ctgtgcttggactgaagggagctc 170
|||| |||||||||||||||||||
Sbjct: 144 ctgtacttggactgaagggagctc 167
>40069_ath-MIR319a:mirbase
Length = 176
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 144 ttctctttgattggactgaagggagctc 171
>39858_aly-MIR319a:mirbase
Length = 221
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 143 ttctctgtgcttggactgaagggagctc 170
|||||| || ||||||||||||||||||
Sbjct: 167 ttctctttgattggactgaagggagctc 194
