miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52453_ptc-miRf10631-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 ccttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcattaagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcattaagcct 60
Query: 61 gggtcctaatgccggatccaatggaattgggtcctaacgcatgacccaatgg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggtcctaatgccggatccaatggaattgggtcctaacgcatgacccaatgg 112
>52144_ptc-miRf10322-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 ccttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcattaagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcattaagcct 60
Query: 61 gggtcctaatgccggatccaatggaattgggtcctaacgcatgacccaatgg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggtcctaatgccggatccaatggaattgggtcctaacgcatgacccaatgg 112
>52612_ptc-miRf10790-akr:pmrd
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 2 cttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcatt 54
||||||||||||| |||||| || ||||||||||||| ||||| ||| ||||
Sbjct: 16 cttgggtcttgatagaggacccaacaaaattgggtccttacgcacgacccatt 68
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 gaaggacctaataaaattgggtcc 38
||||||||||| ||||||||||||
Sbjct: 144 gaaggacctaacaaaattgggtcc 121
>52677_ptc-miRf10855-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 17 aggacctaataaaattgggtcctgacgcatga 48
|||||| || |||||||||||||||| |||||
Sbjct: 80 aggacccaagaaaattgggtcctgacacatga 49
>52359_ptc-miRf10537-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 18 ggacctaataaaattgggtcctgacgcatgac 49
|||||||| | ||||||||||||| |||||||
Sbjct: 60 ggacctaaaagaattgggtcctgatgcatgac 91
>52106_ptc-miRf10284-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 7 gtcttgatgaaggacctaataaaattgggtcc 38
||||||||||| |||| |||| ||||||||||
Sbjct: 26 gtcttgatgaaagacccaatagaattgggtcc 57
