miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54284_ptc-miRf12462-akr:pmrd
Length = 147
Score = 220 bits (111), Expect = 2e-58
Identities = 129/135 (95%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 tgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctatttctgagtg 64
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct: 65 ggcagcgactcagttttccttgactgtttatgagtcgacaggggcagtgtgggctgacga 124
Query: 122 atccattcgtcacct 136
|||||||||||||||
Sbjct: 125 atccattcgtcacct 139
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 105 gctgtgtgggctgacgaatccattcgtcacctgtga 140
||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacctgtga 36
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagc 37
|||||||||||||||||||||||||||| |||||||
Sbjct: 112 tgtgggctgacgaatccattcgtcacctatgaaagc 147
>54280_ptc-miRf12458-akr:pmrd
Length = 147
Score = 220 bits (111), Expect = 2e-58
Identities = 129/135 (95%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 tgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctatttctgagtg 64
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct: 65 ggcagcgactcagttttccttgactgtttatgagtcgacaggggcagtgtgggctgacga 124
Query: 122 atccattcgtcacct 136
|||||||||||||||
Sbjct: 125 atccattcgtcacct 139
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 105 gctgtgtgggctgacgaatccattcgtcacctgtga 140
||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacctgtga 36
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagc 37
|||||||||||||||||||||||||||| |||||||
Sbjct: 112 tgtgggctgacgaatccattcgtcacctctgaaagc 147
>53531_ptc-miRf11709-akr:pmrd
Length = 147
Score = 208 bits (105), Expect = 8e-55
Identities = 126/133 (94%)
Strand = Plus / Plus
Query: 4 tgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtggg 63
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 7 tgggctgacgaatccattcgtcacctctgaaagcagtttcgggggctttttctgagtggg 66
Query: 64 cagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacgaat 123
||||||||||||||||||||||||||||||||| || || ||||||||||||||| ||||
Sbjct: 67 cagcgactcagttttccttgactgtttatgagtcaattggggctgtgtgggctgatgaat 126
Query: 124 ccattcgtcacct 136
|||||||||||||
Sbjct: 127 ccattcgtcacct 139
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagc 37
|||||||||| ||||||||||||||||| |||||||
Sbjct: 112 tgtgggctgatgaatccattcgtcacctatgaaagc 147
>54285_ptc-miRf12463-akr:pmrd
Length = 147
Score = 196 bits (99), Expect = 3e-51
Identities = 129/139 (92%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct: 5 tgtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtg 64
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct: 65 ggcagcgactcagttttccttgactgtttatgagtcgacaggggctgcgtgggctgacga 124
Query: 122 atccattcgtcacctgtga 140
|||||||||| ||||||||
Sbjct: 125 atccattcgtaacctgtga 143
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 105 gctgtgtgggctgacgaatccattcgtcacct 136
||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacct 32
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 3 gtgggctgacgaatccattcgtcacctgtgaaagc 37
|||||||||||||||||||||| ||||||||||||
Sbjct: 113 gtgggctgacgaatccattcgtaacctgtgaaagc 147
>54278_ptc-miRf12456-akr:pmrd
Length = 144
Score = 188 bits (95), Expect = 7e-49
Identities = 131/139 (94%), Gaps = 3/139 (2%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
|||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct: 5 tgtgggctgacgaatccattcgtcacctatgaaagcagtttc-ggggctatttctgagt- 62
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 63 ggcagcgactcagttttccttgactgtttatgagt-cacaggggctgtgtgggctgacga 121
Query: 122 atccattcgtcacctgtga 140
|||||||||||||||||||
Sbjct: 122 atccattcgtcacctgtga 140
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagc 37
||||||||||||||||||||||||||||||||||||
Sbjct: 109 tgtgggctgacgaatccattcgtcacctgtgaaagc 144
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 105 gctgtgtgggctgacgaatccattcgtcacct 136
||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacct 32
>54277_ptc-miRf12455-akr:pmrd
Length = 144
Score = 188 bits (95), Expect = 7e-49
Identities = 131/139 (94%), Gaps = 3/139 (2%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
|||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct: 5 tgtgggctgacgaatccattcgtcacctatgaaagcagtttc-ggggctatttctgagt- 62
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 63 ggcagcgactcagttttccttgactgtttatgagt-cacaggggctgtgtgggctgacga 121
Query: 122 atccattcgtcacctgtga 140
|||||||||||||||||||
Sbjct: 122 atccattcgtcacctgtga 140
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagc 37
||||||||||||||||||||||||||||||||||||
Sbjct: 109 tgtgggctgacgaatccattcgtcacctgtgaaagc 144
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 105 gctgtgtgggctgacgaatccattcgtcacct 136
||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacct 32
>54286_ptc-miRf12464-akr:pmrd
Length = 135
Score = 186 bits (94), Expect = 3e-48
Identities = 125/134 (93%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 3 gtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtgg 62
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
Query: 63 gcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacgaa 122
|||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
Query: 123 tccattcgtcacct 136
||||||||||||||
Sbjct: 120 tccattcgtcacct 133
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacct 29
||||||||||||||||||||||||||||
Sbjct: 106 tgtgggctgacgaatccattcgtcacct 133
>54282_ptc-miRf12460-akr:pmrd
Length = 136
Score = 186 bits (94), Expect = 3e-48
Identities = 124/134 (92%)
Strand = Plus / Plus
Query: 3 gtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtgg 62
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcactttcggggcctatttctcagtgg 60
Query: 63 gcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacgaa 122
|||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||
Sbjct: 61 gcagcgactcagttttccttgactgtttatgagtacacaggggctgtgtgggttgacgaa 120
Query: 123 tccattcgtcacct 136
| ||||||||||||
Sbjct: 121 ttcattcgtcacct 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacct 29
|||||| |||||||| ||||||||||||
Sbjct: 107 tgtgggttgacgaattcattcgtcacct 134
>52632_ptc-miRf10810-akr:pmrd
Length = 135
Score = 186 bits (94), Expect = 3e-48
Identities = 125/134 (93%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 3 gtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtgg 62
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
Query: 63 gcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacgaa 122
|||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
Query: 123 tccattcgtcacct 136
||||||||||||||
Sbjct: 120 tccattcgtcacct 133
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacct 29
||||||||||||||||||||||||||||
Sbjct: 106 tgtgggctgacgaatccattcgtcacct 133
>53591_ptc-miRf11769-akr:pmrd
Length = 146
Score = 172 bits (87), Expect = 4e-44
Identities = 127/139 (91%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||
Sbjct: 5 tgtgggctgacgaatccattcgtcacctgtgaaagcactttcaggcgctatttgtgagtg 64
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||||||| ||||||||||||||||||||||||||| | | | ||||||| ||| ||||||
Sbjct: 65 ggcagcgtctcagttttccttgactgtttatgagtcaccaggggctgtgggggttgacga 124
Query: 122 atccattcgtcacctgtga 140
|| ||||||||||||||||
Sbjct: 125 at-cattcgtcacctgtga 142
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 105 gctgtgtgggctgacgaatccattcgtcacctgtga 140
||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacctgtga 36
>54279_ptc-miRf12457-akr:pmrd
Length = 152
Score = 165 bits (83), Expect = 1e-41
Identities = 122/135 (90%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct: 6 tgtgggctgacgaatccattcgtcacctctgaaagctgtttcgggggctatttcttagtg 65
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||| |||||||||||||||||||||| ||| |||| | | ||| ||||||||||||||
Sbjct: 66 ggcggcgactcagttttccttgactggttaagagtccataggggcagtgtgggctgacga 125
Query: 122 atccattcgtcacct 136
|||||||||||||||
Sbjct: 126 atccattcgtcacct 140
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 104 ggctgtgtgggctgacgaatccattcgtcacct 136
|||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgtgtgggctgacgaatccattcgtcacct 33
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagca 38
|||||||||||||||||||||||||||| ||||||||
Sbjct: 113 tgtgggctgacgaatccattcgtcacctatgaaagca 149
>54281_ptc-miRf12459-akr:pmrd
Length = 147
Score = 163 bits (82), Expect = 4e-41
Identities = 121/134 (90%)
Strand = Plus / Plus
Query: 3 gtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtgg 62
||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |
Sbjct: 6 gtgggctgacgaatccattcgtcacctatgaaagcagtttcaggggctatttctgagttg 65
Query: 63 gcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacgaa 122
| |||||||||||||||| ||||| ||||||||| || | ||||||||||| |||||||
Sbjct: 66 gtagcgactcagttttccgtgactatttatgagtacacaggggctgtgtgggttgacgaa 125
Query: 123 tccattcgtcacct 136
|||||| |||||||
Sbjct: 126 tccattggtcacct 139
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 105 gctgtgtgggctgacgaatccattcgtcacct 136
|||| |||||||||||||||||||||||||||
Sbjct: 1 gctgggtgggctgacgaatccattcgtcacct 32
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagc 37
|||||| ||||||||||||| ||||||| |||||||
Sbjct: 112 tgtgggttgacgaatccattggtcacctatgaaagc 147
>53307_ptc-miRf11485-akr:pmrd
Length = 140
Score = 149 bits (75), Expect = 6e-37
Identities = 121/135 (89%), Gaps = 1/135 (0%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtg 61
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 4 tgtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgtt 63
Query: 62 ggcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacga 121
||| ||||||| |||||||||||||||||||||| || | ||||||||||| ||| ||
Sbjct: 64 cgcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatga 122
Query: 122 atccattcgtcacct 136
|||||||||||||||
Sbjct: 123 atccattcgtcacct 137
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 108 gtgtgggctgacgaatccattcgtcacctgtga 140
|||||||||||||||||||||||||||||||||
Sbjct: 3 gtgtgggctgacgaatccattcgtcacctgtga 35
>52128_ptc-miRf10306-akr:pmrd
Length = 142
Score = 147 bits (74), Expect = 3e-36
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 31 tgaaagcattttcgggggctatttctgagtgggcagcgactcagttttccttgactgttt 90
|||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct: 5 tgaaagcagtttcgggggctgtttgtgagtggg-agcgactcagttttccttgactgttt 63
Query: 91 atgagtgaactgtggctgtgtgggctgacgaatccattcgtcacct 136
|||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 64 atgagttaattgtggctgtgttggctgacgaatccattcgtcacct 109
Score = 73.8 bits (37), Expect = 3e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 6 ggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtgg 62
|||||||||||||||||||||||| |||||||| ||||||| ||| ||||| |||||
Sbjct: 86 ggctgacgaatccattcgtcacctctgaaagcagtttcgggagctgtttcttagtgg 142
>54283_ptc-miRf12461-akr:pmrd
Length = 137
Score = 145 bits (73), Expect = 1e-35
Identities = 122/137 (89%), Gaps = 1/137 (0%)
Strand = Plus / Plus
Query: 3 gtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtgg 62
||||||| ||||||||||||||||||| |||||||| |||||||| || ||||| |||||
Sbjct: 2 gtgggctaacgaatccattcgtcacctatgaaagcagtttcgggg-ctttttcttagtgg 60
Query: 63 gcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacgaa 122
||||||||| |||||||| | || |||||||||| ||| | |||||||||||||||||||
Sbjct: 61 gcagcgacttagttttccctaacagtttatgagtcaacagaggctgtgtgggctgacgaa 120
Query: 123 tccattcgtcacctgtg 139
| ||||||| |||||||
Sbjct: 121 tacattcgtaacctgtg 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 tgtgggctgacgaatccattcgtcacctgtg 32
||||||||||||||| ||||||| |||||||
Sbjct: 107 tgtgggctgacgaatacattcgtaacctgtg 137
>54330_ptc-miRf12508-akr:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 atttctgagtgggcagcgactcagttttc 79
|||||||||| || |||||||||||||||
Sbjct: 115 atttctgagttggtagcgactcagttttc 143
