miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52580_ptc-miRf10758-akr:pmrd
Length = 152
Score = 125 bits (63), Expect = 7e-30
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 1 cgaactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggactcag 60
|||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 91 cgaaatggtgtcacgggtgacgcacggattcgacagcccaaacagcccctagggactcag 32
Query: 61 aaataatcaacgaactggtgtcacgggtgac 91
||| ||||||||| || |||||||||||||
Sbjct: 31 aaaccatcaacgaaatgctgtcacgggtgac 1
Score = 123 bits (62), Expect = 3e-29
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 17 gtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaacgaact 76
|||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
Sbjct: 145 gtgacgcacggattcgacagcccaaacaccccttagggactcagaaatcatcaacgaaat 86
Query: 77 ggtgtcacgggtgacgcatggattcg 102
|||||||||||||||||| |||||||
Sbjct: 85 ggtgtcacgggtgacgcacggattcg 60
>52569_ptc-miRf10747-akr:pmrd
Length = 154
Score = 119 bits (60), Expect = 4e-28
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 3 aactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggactcagaa 62
||||| |||||| |||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 125 aactgctgtcacgggtgacgcatggattcgacagcccgaacagcccctagggcctcagaa 66
Query: 63 ataatcaacgaactggtgtcacgggtgacgcatggattcg 102
| || || ||||| ||||||||||||||||||||||||
Sbjct: 65 ttcattcaccaactgctgtcacgggtgacgcatggattcg 26
Score = 85.7 bits (43), Expect = 6e-18
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 44 agcccctagggactcagaaataatcaacgaactggtgtcacgggtgacgcatggattcg 102
||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 154 agcccctagggcctcagaaatcatcaaccaactgctgtcacgggtgacgcatggattcg 96
Score = 69.9 bits (35), Expect = 3e-13
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 3 aactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggact 57
||||| |||||| |||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 55 aactgctgtcacgggtgacgcatggattcgacagctcgaacaacccctagggact 1
>53181_ptc-miRf11359-akr:pmrd
Length = 115
Score = 105 bits (53), Expect = 6e-24
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 18 tgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaacgaactg 77
||||| |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 100 tgacggatggatgcgacagcccaaacagcccgtagggactcagaaatcatcaacgaactg 41
Query: 78 gtgtcacgggtgacgcatggattcg 102
| || ||| |||||||||||||||
Sbjct: 40 ctctcgcggctgacgcatggattcg 16
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 18 tgacgcatggattcgacagcccaaacagcc 47
|||||||||||||||||||| |||||||||
Sbjct: 30 tgacgcatggattcgacagcgcaaacagcc 1
>52640_ptc-miRf10818-akr:pmrd
Length = 136
Score = 103 bits (52), Expect = 2e-23
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 18 tgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaacgaactg 77
||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 136 tgacgcatgtattcgagagcacaaacagcccctagggactcagaaagcatcaacgaactg 77
Query: 78 gtgtcacgggtgacgcatggattc 101
|||||||||||| ||| ||||||
Sbjct: 76 ctgtcacgggtgatgcagggattc 53
Score = 69.9 bits (35), Expect = 3e-13
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 1 cgaactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggactcag 60
||||||| |||||| ||||| ||| |||||| ||||||||||||||||||||| ||||
Sbjct: 83 cgaactgctgtcacgggtgatgcagggattcaacagcccaaacagcccctaggcactcgt 24
Query: 61 aaataatcaacgaactggtgtca 83
| || | |||||||||| |||||
Sbjct: 23 atatcaccaacgaactgctgtca 1
>53619_ptc-miRf11797-akr:pmrd
Length = 113
Score = 93.7 bits (47), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 24 atggattcgacagcccaaacagcccctagggactcagaaataatcaacgaactggtgtca 83
|||||||||||||||| ||||||| | ||||||||||||| |||||||||||| |||||
Sbjct: 113 atggattcgacagccccaacagccg-tcgggactcagaaatcatcaacgaactgctgtca 55
Query: 84 cgggtgacgcatggattcg 102
|||||||||||||| ||||
Sbjct: 54 cgggtgacgcatgggttcg 36
Score = 85.7 bits (43), Expect = 6e-18
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 1 cgaactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggactca 59
||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 67 cgaactgctgtcacgggtgacgcatgggttcgatagcccaaacagcccctagggactca 9
>52135_ptc-miRf10313-akr:pmrd
Length = 116
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 16 ggtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaacgaa 74
|||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 97 ggtgacacatggattcgacagcgcaaacagcccatagggactcagaaataatcaacgaa 39
>54242_ptc-miRf12420-akr:pmrd
Length = 104
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 33 acagcccaaacagcccctagggactcagaaataatcaacgaactggtgtcacgggtgacg 92
|||||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||
Sbjct: 100 acagcccaaagagccccttgggactcagaaaccatcaacgaactgctttcacgggtgacg 41
Query: 93 catggattc 101
|||||||||
Sbjct: 40 catggattc 32
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 cgaactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggactcag 60
||||||| | |||| |||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 62 cgaactgctttcacgggtgacgcatggattccacagcccaaacagcccctatggactcag 3
Query: 61 aa 62
||
Sbjct: 2 aa 1
>54241_ptc-miRf12419-akr:pmrd
Length = 93
Score = 85.7 bits (43), Expect = 6e-18
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 35 agcccaaacagcccctagggactcagaaataatcaacgaactggtgtcacgggtgacgca 94
|||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||
Sbjct: 93 agcccaaagagccccttgggactcagaaaccatcaacgaactgctttcacgggtgacgca 34
Query: 95 tggattc 101
|||||||
Sbjct: 33 tggattc 27
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 1 cgaactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggact 57
||||||| | |||| |||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 57 cgaactgctttcacgggtgacgcatggattccacagcccaaacagcccctatggact 1
>52115_ptc-miRf10293-akr:pmrd
Length = 155
Score = 85.7 bits (43), Expect = 6e-18
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 12 cactggtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaac 71
|||||||||||||||||||||||||| |||||||||| | ||| ||||||||| ||||||
Sbjct: 144 cactggtgacgcatggattcgacagcgcaaacagcccatggggcctcagaaatcatcaac 85
Query: 72 gaa 74
|||
Sbjct: 84 gaa 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 3 aactggtgtcactggtgacgcatggattcgacagcccaaacagcccc 49
||||||| ||| ||||| ||||| |||||||||| |||||||||||
Sbjct: 47 aactggttccacaggtgaagcatgcattcgacagcgcaaacagcccc 1
>52102_ptc-miRf10280-akr:pmrd
Length = 113
Score = 85.7 bits (43), Expect = 6e-18
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 16 ggtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaacgaa 74
|||||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct: 73 ggtgacgcttggattcgacagcccaaacagaccctagggactcagatatcatcaacgaa 15
>52101_ptc-miRf10279-akr:pmrd
Length = 113
Score = 85.7 bits (43), Expect = 6e-18
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 16 ggtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaacgaa 74
|||||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct: 73 ggtgacgcttggattcgacagcccaaacagaccctagggactcagatatcatcaacgaa 15
>54125_ptc-miRf12303-akr:pmrd
Length = 111
Score = 79.8 bits (40), Expect = 4e-16
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 30 tcgacagcccaaacagcccctagggactcagaaataatcaacgaactggtgtcacgggtg 89
|||||||||| |||||||||||||| || ||| || |||||| |||| |||||||||||
Sbjct: 111 tcgacagcccgaacagcccctagggcctgagatatcatcaaccaactactgtcacgggtg 52
Query: 90 acgcatggattc 101
||||||||||||
Sbjct: 51 acgcatggattc 40
Score = 75.8 bits (38), Expect = 5e-15
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 9 tgtcactggtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatc 68
|||||| |||||||||||||||| ||||| | ||||||||||||||||| |||||| |||
Sbjct: 62 tgtcacgggtgacgcatggattccacagcacgaacagcccctagggactgagaaatcatc 3
Query: 69 aa 70
||
Sbjct: 2 aa 1
>53522_ptc-miRf11700-akr:pmrd
Length = 142
Score = 71.9 bits (36), Expect = 9e-14
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 3 aactggtgtcactggtgacgcatggattcgacagcccaaacagcccctagggactc 58
||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 87 aactgttgtcacgggtgctgcatggattggacagcccaaacagcccctagggactc 142
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 39 caaacagcccctagggactcagaaataatcaacg-aactggtgtcacgggtgacgcatgg 97
|||||||||||| |||||||| | || ||||||| ||||| ||||||||||| ||||||
Sbjct: 52 caaacagcccctcgggactcaaatatcatcaacgaaactgttgtcacgggtgctgcatgg 111
Query: 98 att 100
|||
Sbjct: 112 att 114
>52668_ptc-miRf10846-akr:pmrd
Length = 121
Score = 71.9 bits (36), Expect = 9e-14
Identities = 79/92 (85%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 12 cactggtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaac 71
||||||||||||||| |||||||||| |||||||||| | ||| || | |||| ||||||
Sbjct: 109 cactggtgacgcatgcattcgacagcgcaaacagcccgtggggcctaaaaaatcatcaac 50
Query: 72 g-aactggtgtcacgggtgacgcatggattcg 102
| ||||| | ||||||||||||||| |||||
Sbjct: 49 gaaactgcttccacgggtgacgcatgcattcg 18
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 16 ggtgacgcatggattcgacagcccaaacagc 46
||||||||||| |||||||||| ||||||||
Sbjct: 34 ggtgacgcatgcattcgacagcgcaaacagc 4
>52095_ptc-miRf10273-akr:pmrd
Length = 155
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 12 cactggtgacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaac 71
||||||||||| |||||||||||||| |||||| |||| ||| ||||||||| |||||
Sbjct: 91 cactggtgacgaatggattcgacagcgtaaacaggcccttgggcctcagaaatcttcaac 32
Query: 72 gaa 74
|||
Sbjct: 31 gaa 29
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 19 gacgcatggattcgacagcccaaacagcccctagggactcagaaataatcaacgaa 74
|||||||| |||| ||||| |||||||||||| || ||||||||| ||||||||
Sbjct: 155 gacgcatgcattctacagcgcaaacagcccctgcggcctcagaaatcttcaacgaa 100
>53524_ptc-miRf11702-akr:pmrd
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 39 caaacagcccctagggactcagaaataatcaacg-aactggtgtcacgggtgacgcatgg 97
|||||||||||| |||||||| | || ||||||| ||||| ||||||||||| ||||||
Sbjct: 41 caaacagcccctcgggactcaaatatcatcaacgaaactgttgtcacgggtgctgcatgg 100
Query: 98 att 100
|||
Sbjct: 101 att 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 3 aactggtgtcactggtgacgcatggattcgacagcccaaacagcc 47
||||| |||||| |||| ||||||||| ||||||||||||||||
Sbjct: 76 aactgttgtcacgggtgctgcatggattggacagcccaaacagcc 120
>53523_ptc-miRf11701-akr:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 39 caaacagcccctagggactcagaaataatcaacg-aactggtgtcacgggtgacgcatgg 97
|||||||||||| |||||||| | || ||||||| ||||| ||||||||||| ||||||
Sbjct: 42 caaacagcccctcgggactcaaatatcatcaacgaaactgttgtcacgggtgctgcatgg 101
Query: 98 att 100
|||
Sbjct: 102 att 104
Score = 52.0 bits (26), Expect = 8e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 3 aactggtgtcactggtgacgcatggattcgacagcccaaacagccc 48
||||| |||||| |||| ||||||||| |||||||||||||||||
Sbjct: 77 aactgttgtcacgggtgctgcatggattggacagcccaaacagccc 122
>52574_ptc-miRf10752-akr:pmrd
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 23 catggattcgacagcccaaacagcccctagggactcagaaataatcaacgaa 74
|||| |||||||||| |||||||||||| || ||||||||| ||||||||
Sbjct: 75 catgcattcgacagcgcaaacagcccctgcggcctcagaaatcttcaacgaa 24
