miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52572_ptc-miRf10750-akr:pmrd
Length = 91
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 attgtatgcagtccacagtgaaaaggctaaagcctttag 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attgtatgcagtccacagtgaaaaggctaaagcctttag 39
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 64 atgcctttcactgtggactgcacagtgcagt 94
|||||||||||||||||||||||||||||||
Sbjct: 61 atgcctttcactgtggactgcacagtgcagt 91
>54106_ptc-miRf12284-akr:pmrd
Length = 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 atgcctttcactgtggactgcacagtgcagt 94
|||||||| ||||||||||||||||||||||
Sbjct: 72 atgccttttactgtggactgcacagtgcagt 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 66 gcctttcactgtggactgcacagtgcagt 94
|||||| |||||||| |||||||||||||
Sbjct: 1 gccttttactgtggagtgcacagtgcagt 29
>54105_ptc-miRf12283-akr:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 atgcctttcactgtggactgcacagtgcagt 94
|||||||| ||||||||||||||||||||||
Sbjct: 64 atgccttttactgtggactgcacagtgcagt 94
>52535_ptc-miRf10713-akr:pmrd
Length = 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 atgcctttcactgtggactgcacagtgcagt 94
|||||||| ||||||||||||||||||||||
Sbjct: 72 atgccttttactgtggactgcacagtgcagt 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 66 gcctttcactgtggactgcacagtgcagt 94
|||||| |||||||| |||||||||||||
Sbjct: 1 gccttttactgtggagtgcacagtgcagt 29
>53774_ptc-miRf11952-akr:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 actgtggactgcacagtgcagt 94
||||||||||||||||||||||
Sbjct: 39 actgtggactgcacagtgcagt 60
>52897_ptc-miRf11075-akr:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 73 actgtggactgcacagtgcagt 94
||||||||||||||||||||||
Sbjct: 45 actgtggactgcacagtgcagt 24
>54016_ptc-miRf12194-akr:pmrd
Length = 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 71 tcactgtggactgcacagtgcagt 94
||||||||||||||| ||||||||
Sbjct: 42 tcactgtggactgcatagtgcagt 19
