miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52715_ptc-miRf10893-akr:pmrd
Length = 98
Score = 131 bits (66), Expect = 8e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 agcaggaatagtgcagcatgctgcactgttactaattaattagcaggaatagtgcagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 agcaggaatagtgcagcatgctgcactgttactaattaattagcaggaatagtgcagctt 92
Query: 61 gctgca 66
||||||
Sbjct: 93 gctgca 98
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 32 ctaattaattagcaggaatagtgcagcttgctgcattgtt 71
||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 23 ctaattaattagcaggaatagtgcagcatgctgcactgtt 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 43/50 (86%), Gaps = 3/50 (6%)
Strand = Plus / Minus
Query: 10 agtgcagcatgctgcactgt---tactaattaattagcaggaatagtgca 56
|||||||||||||||||| | | |||||||||||||| ||| ||||||
Sbjct: 59 agtgcagcatgctgcactattcctgctaattaattagcatgaacagtgca 10
>52842_ptc-miRf11020-akr:pmrd
Length = 104
Score = 75.8 bits (38), Expect = 4e-15
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 6 gaatagtgcagcatgct---gcactgttactaattaattagcaggaatagtgcagcttgc 62
||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 40 gaatagtgcagcatgctgctgcactgttcctaattaattagcaggaagagtgcagattgc 99
Query: 63 tgca 66
||||
Sbjct: 100 tgca 103
Score = 56.0 bits (28), Expect = 4e-09
Identities = 51/58 (87%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 11 gtgcagcatgctgcactgtta---ctaattaattagcaggaatagtgcagcttgctgc 65
|||||||||||||||||||| |||||||||||| | |||||||||||| ||||||
Sbjct: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgcagcatgctgc 58
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 32 ctaattaattagcaggaatagtgcagcttgctgca 66
|||||||||||||| ||| |||||||| |||||||
Sbjct: 36 ctaattaattagcatgaacagtgcagcatgctgca 2
>53911_ptc-miRf12089-akr:pmrd
Length = 104
Score = 71.9 bits (36), Expect = 6e-14
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 19 tgctgcactgttactaattaattagcaggaatagtgcagcttgctgca 66
|||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 56 tgctgcactgttcctaattaattagcaggaagagtgcagattgctgca 103
Score = 48.1 bits (24), Expect = 9e-07
Identities = 44/50 (88%), Gaps = 3/50 (6%)
Strand = Plus / Plus
Query: 11 gtgcagcatgctgcactgt---tactaattaattagcaggaatagtgcag 57
||||||||||||||||||| | |||||||||||| | |||||||||||
Sbjct: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgcag 50
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 32 ctaattaattagcaggaatagtgcagcttgctgca 66
|||||||||||||| ||| |||||||| |||||||
Sbjct: 36 ctaattaattagcatgaacagtgcagcatgctgca 2
>54301_ptc-miRf12479-akr:pmrd
Length = 64
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 gaatagtgcagcatgctgcactgtt 30
|||||||||||||||||||||||||
Sbjct: 5 gaatagtgcagcatgctgcactgtt 29
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 gaatagtgcagcttgctgcattgttcgcgt 76
|||||||||||| ||||||| |||||||||
Sbjct: 5 gaatagtgcagcatgctgcactgttcgcgt 34
>53787_ptc-miRf11965-akr:pmrd
Length = 64
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 gaatagtgcagcatgctgcactgtt 30
|||||||||||||||||||||||||
Sbjct: 5 gaatagtgcagcatgctgcactgtt 29
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 gaatagtgcagcttgctgcattgttcgcgt 76
|||||||||||| ||||||| |||||||||
Sbjct: 5 gaatagtgcagcatgctgcactgttcgcgt 34
