miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52717_ptc-miRf10895-akr:pmrd
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 ttagacccaagactcttgggtctagcattgcctcctgaaccaagtctctggggtttgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttagacccaagactcttgggtctagcattgcctcctgaaccaagtctctggggtttgacg 62
Query: 61 gtcatgccagacccaaggcttttgggtttaa 91
|||||||||||||||||||||||||||||||
Sbjct: 63 gtcatgccagacccaaggcttttgggtttaa 93
>52261_ptc-miRf10439-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttagacccaagactcttgggtctag 25
||||||||||| |||||||||||||
Sbjct: 1 ttagacccaagtctcttgggtctag 25
>53734_ptc-miRf11912-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 gccagacccaaggcttttgggttt 89
||||||||||||||| ||||||||
Sbjct: 30 gccagacccaaggctattgggttt 7
>52431_ptc-miRf10609-akr:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 70 gacccaaggcttttgggttt 89
||||||||||||||||||||
Sbjct: 77 gacccaaggcttttgggttt 58
>52314_ptc-miRf10492-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66 gccagacccaaggcttttgggttt 89
||||||||||||||| ||||||||
Sbjct: 82 gccagacccaaggctattgggttt 59
>51899_ptc-miRf10077-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 gccagacccaaggcttttgggttt 89
||||||||||||||| ||||||||
Sbjct: 75 gccagacccaaggctattgggttt 98
