miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 6 aacctcttggtcccaagctcttaccactggaccaccacctagatggttcctttaattata 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aacctcttggtcccaagctcttaccactggaccaccacctagatggttcctttaattata 50
Query: 66 ttaataagagaggtggtggccagtagtaagaatttgggatcaaaagatt 114
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ttaataagagaggtggtggccagtagtaagaatttgggatcaaaagatt 1
>53645_ptc-miRf11823-akr:pmrd
Length = 99
Score = 196 bits (99), Expect = 3e-51
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 11 cttggtcccaagctcttaccactggaccaccacctagatggttcctttaattatattaat 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 cttggtcccaagctcttaccactggaccaccacctagatggttcctttaattatattaat 40
Query: 71 aagagaggtggtggccagtagtaagaatttgggatcaaa 109
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 aagagaggtggtggccagtagtaagaatttgggatcaaa 1
>53367_ptc-miRf11545-akr:pmrd
Length = 126
Score = 89.7 bits (45), Expect = 4e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccacctagatggtt 53
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 3 gagcaaacctcttgatcccaagttcttaccactggaccaccacctagatggtt 55
>53981_ptc-miRf12159-akr:pmrd
Length = 92
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccacctagat 49
||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 49 gagcaaacctcttggtcccaagctcttaccactgggtcatcacctagat 1
>53706_ptc-miRf11884-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 2 agcaaacctcttggtcccaagctcttaccactggaccacca 42
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 42 agcaaacctcttggtcccaagctcttaccactgggccacca 2
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 2 agcaaacctcttggtcccaagctcttaccactggaccaccacctagatg 50
||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 49 agcaaacctcttgatcccaggcttttaccactggaccaccacctagatg 1
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccac 43
|||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 43 gagcaaacctcttgatcccaagttcttaccactggaccaccac 1
>54124_ptc-miRf12302-akr:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccac 43
||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 43 gagcaaatctcttggtcccaagctcttaccactgggccaccac 1
>53982_ptc-miRf12160-akr:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccac 43
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 43 gagcaaacctcttggtcccaagctcttaccactgagccaccac 1
>53107_ptc-miRf11285-akr:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccac 43
||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 43 gagcaaacctcttggtcccaaactcttaccactgggccaccac 1
>52111_ptc-miRf10289-akr:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccac 43
|||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 43 gagcaaacatcttggtcccaagctcttaccactgggccaccac 1
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 4 caaacctcttggtcccaagctcttaccactggaccaccac 43
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 40 caaacttcttgatcccaagctcttaccactggaccaccac 1
>53368_ptc-miRf11546-akr:pmrd
Length = 78
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 24 tcttaccactggaccaccacctagatggtt 53
||||||||||||||||||||||||||||||
Sbjct: 2 tcttaccactggaccaccacctagatggtt 31
>52556_ptc-miRf10734-akr:pmrd
Length = 76
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 24 tcttaccactggaccaccacctagatggtt 53
||||||||||||||||||||||||||||||
Sbjct: 76 tcttaccactggaccaccacctagatggtt 47
>53369_ptc-miRf11547-akr:pmrd
Length = 74
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 25 cttaccactggaccaccacctagatggtt 53
|||||||||||||||||||||||||||||
Sbjct: 1 cttaccactggaccaccacctagatggtt 29
>52747_ptc-miRf10925-akr:pmrd
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactggaccaccac 43
|||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 43 gagcaaacctcttgatcccaaattcttaccactgggccaccac 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 ccagtagtaagaatttgggatcaa 108
||||| ||||||||||||||||||
Sbjct: 9 ccagtggtaagaatttgggatcaa 32
>52918_ptc-miRf11096-akr:pmrd
Length = 80
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 gagcaaacctcttggtcccaagctcttaccactg 34
||||||||| ||| ||||||||||||||||||||
Sbjct: 43 gagcaaaccccttagtcccaagctcttaccactg 10
>53901_ptc-miRf12079-akr:pmrd
Length = 72
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ttaccactggaccaccacctagatg 50
|||||||||||||||||||||||||
Sbjct: 1 ttaccactggaccaccacctagatg 25
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 26 ttaccactggaccaccacctagatggtt 53
|||| |||||||||||||||||||||||
Sbjct: 72 ttactactggaccaccacctagatggtt 45
>53986_ptc-miRf12164-akr:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 4 caaacctcttggtcccaagctcttaccactgg 35
||||||||||| ||||||| ||||||||||||
Sbjct: 40 caaacctcttgatcccaagttcttaccactgg 9
>53985_ptc-miRf12163-akr:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 4 caaacctcttggtcccaagctcttaccactgg 35
||||||||||| ||||||| ||||||||||||
Sbjct: 40 caaacctcttgatcccaagttcttaccactgg 9
