miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51866_ptc-miRf10044-akr:pmrd
Length = 115
Score = 103 bits (52), Expect = 3e-23
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 20 attattccgtcggtgattggcagtggcatttggagtaattttattccaaccctctgtaaa 79
|||||||||||||||||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct: 20 attattccgtcggtgatttgtagtggcatttattgtaattttattccaaccctctataaa 79
Query: 80 atatcgacgaaattattccgtcggtgat 107
||| ||||| ||| ||||||||||||||
Sbjct: 80 ataccgacggaataattccgtcggtgat 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 gacgaaattattccgtcggtgattt 109
||||| |||||||||||||||||||
Sbjct: 14 gacgagattattccgtcggtgattt 38
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 ataccgatggaattattccgtcggtgat 36
||||||| ||||| ||||||||||||||
Sbjct: 80 ataccgacggaataattccgtcggtgat 107
>53679_ptc-miRf11857-akr:pmrd
Length = 96
Score = 99.6 bits (50), Expect = 4e-22
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 20 attattccgtcggtgattggcagtggcatttggagtaattttattccaaccctctgtaaa 79
|||||||||||||||||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct: 86 attattccgtcggtgatttgtagtggcatttattgtaattttattccaaccctctataaa 27
Query: 80 atatcgacgaaattattccgtcggtg 105
||| ||||| ||| ||||||||||||
Sbjct: 26 ataccgacggaataattccgtcggtg 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 85 gacgaaattattccgtcggtgattt 109
||||| |||||||||||||||||||
Sbjct: 92 gacgagattattccgtcggtgattt 68
>53276_ptc-miRf11454-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 6e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 54 gtaattttattccaaccctctgtaaaatatcgacgaaattattccgtcggtgattt 109
|||||||| ||||||| |||||| ||||| ||||| || ||| |||||||||||||
Sbjct: 85 gtaatttttttccaactctctgtgaaataccgacggaactatgccgtcggtgattt 140
>54293_ptc-miRf12471-akr:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 atataccgatggaattattccgtcggt 33
|||||||||||||| ||||||||||||
Sbjct: 44 atataccgatggaaatattccgtcggt 18
>53961_ptc-miRf12139-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 atataccgatggaattattccgtcggt 33
|||||||||| ||||||||||||||||
Sbjct: 29 atataccgatagaattattccgtcggt 55
>53401_ptc-miRf11579-akr:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 atataccgatggaattattccgtcggt 33
|||||||||||||| ||||||||||||
Sbjct: 37 atataccgatggaaatattccgtcggt 11
>54236_ptc-miRf12414-akr:pmrd
Length = 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 52 atataccgacggaatcattccgtcggtgat 23
>54123_ptc-miRf12301-akr:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 37 atataccgacggaatcattccgtcggtgat 8
>53802_ptc-miRf11980-akr:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 37 atataccgacggaatcattccgtcggtgat 8
>53322_ptc-miRf11500-akr:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 37 atataccgacggaatcattccgtcggtgat 8
>53099_ptc-miRf11277-akr:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 37 atataccgacggaatcattccgtcggtgat 8
>52553_ptc-miRf10731-akr:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 73 atataccgacggaataattccgtcggtgat 102
>52539_ptc-miRf10717-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 75 atataccgacggaatcattccgtcggtgat 104
>52444_ptc-miRf10622-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 75 atataccgacggaatcattccgtcggtgat 104
>52137_ptc-miRf10315-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 atataccgatggaattattccgtcggtgat 36
||||||||| ||||| ||||||||||||||
Sbjct: 75 atataccgacggaatcattccgtcggtgat 104
>53978_ptc-miRf12156-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ccgatggaattattccgtcggtgat 36
|||| ||||||||||||||||||||
Sbjct: 8 ccgacggaattattccgtcggtgat 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 cgacgaaattattccgtcggtgat 107
||||| ||||||||||||||||||
Sbjct: 9 cgacggaattattccgtcggtgat 32
>53626_ptc-miRf11804-akr:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 cgacgaaattattccgtcggt 104
|||||||||||||||||||||
Sbjct: 40 cgacgaaattattccgtcggt 60
>52463_ptc-miRf10641-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ccgatggaattattccgtcggtgat 36
|||| ||||||||||||||||||||
Sbjct: 8 ccgacggaattattccgtcggtgat 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 cgacgaaattattccgtcggtgat 107
||||| ||||||||||||||||||
Sbjct: 9 cgacggaattattccgtcggtgat 32
>54196_ptc-miRf12374-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 taccgatggaattattccgtcggt 33
|||||| |||||||||||||||||
Sbjct: 8 taccgacggaattattccgtcggt 31
>54114_ptc-miRf12292-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 taccgatggaattattccgtcggt 33
||||||||||| ||||||||||||
Sbjct: 44 taccgatggaaatattccgtcggt 21
>54113_ptc-miRf12291-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 taccgatggaattattccgtcggt 33
||||||||||| ||||||||||||
Sbjct: 35 taccgatggaaatattccgtcggt 12
>53627_ptc-miRf11805-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 gacgaaattattccgtcggt 104
||||||||||||||||||||
Sbjct: 1 gacgaaattattccgtcggt 20
>53325_ptc-miRf11503-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 taccgatggaattattccgtcggt 33
|||||| |||||||||||||||||
Sbjct: 8 taccgacggaattattccgtcggt 31
>53220_ptc-miRf11398-akr:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 taccgatggaattattccgtcggt 33
|||||| |||||||||||||||||
Sbjct: 103 taccgacggaattattccgtcggt 80
>52542_ptc-miRf10720-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 taccgatggaattattccgtcggt 33
|||||| |||||||||||||||||
Sbjct: 102 taccgacggaattattccgtcggt 79
>52164_ptc-miRf10342-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 taccgatggaattattccgtcggt 33
|||||| |||||||||||||||||
Sbjct: 102 taccgacggaattattccgtcggt 79
