miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54289_ptc-miRf12467-akr:pmrd
Length = 158
Score = 40.1 bits (20), Expect = 2e-04
Identities = 47/55 (85%), Gaps = 7/55 (12%)
Strand = Plus / Plus
Query: 1 ttcttcttcttctgcacttccatgtctccactattc----acgtgaacagtggag 51
|||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 96 ttcttcttcttctgca---ccatgtctccactgttctgcaacgtgaacagtggag 147
>53763_ptc-miRf11941-akr:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 cactattcacgtgaacagtg 48
||||||||||||||||||||
Sbjct: 50 cactattcacgtgaacagtg 31
>53518_ptc-miRf11696-akr:pmrd
Length = 150
Score = 40.1 bits (20), Expect = 2e-04
Identities = 47/55 (85%), Gaps = 7/55 (12%)
Strand = Plus / Minus
Query: 1 ttcttcttcttctgcacttccatgtctccactattc----acgtgaacagtggag 51
|||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 59 ttcttcttcttctgca---ccatgtctccactgttctgcaacgtgaacagtggag 8
>53517_ptc-miRf11695-akr:pmrd
Length = 158
Score = 40.1 bits (20), Expect = 2e-04
Identities = 47/55 (85%), Gaps = 7/55 (12%)
Strand = Plus / Minus
Query: 1 ttcttcttcttctgcacttccatgtctccactattc----acgtgaacagtggag 51
|||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 63 ttcttcttcttctgca---ccatgtctccactgttctgcaacgtgaacagtggag 12
>53165_ptc-miRf11343-akr:pmrd
Length = 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 cactattcacgtgaacagtg 48
||||||||||||||||||||
Sbjct: 24 cactattcacgtgaacagtg 43
>53096_ptc-miRf11274-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 21 catgtctccactattcacgtgaacagt 47
|||| ||||||| ||||||||||||||
Sbjct: 75 catgcctccactgttcacgtgaacagt 101
