miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52859_ptc-miRf11037-akr:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 9 gacgcgtccaggtccaacatagggttggacatggacgtgcccaggcccaacgtggggttg 68
|||||||||||| ||||||| ||||||| | |||| | || || ||||| ||| | ||
Sbjct: 107 gacgcgtccaggcccaacatggggttgggcgaggacacgtcccggtccaacatggaggtg 48
Query: 69 gaggcggttgcgtccagacccagcatggtgttgggcggggacg 111
|| ||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 47 gacgcggtcgcgtccagacccaacatgggattgggcggggacg 5
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttggac 38
|||||||||||||||||||| ||||||||| |||||||
Sbjct: 11 tgggcgtggacgcgtccaggcccaacatagagttggac 48
>53953_ptc-miRf12131-akr:pmrd
Length = 120
Score = 56.0 bits (28), Expect = 6e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttggacatggac 44
|||||||||||||||||||| ||||| ||| ||||||| |||||
Sbjct: 16 tgggcgtggacgcgtccaggcccaacttagagttggacgtggac 59
>52009_ptc-miRf10187-akr:pmrd
Length = 113
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||||||||||||||||||
Sbjct: 13 tgggcgtggacgcgtccaggtccaacat 40
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 cgtggacgcgtccaggtccaacatagggttgg 36
||||| ||||||||||||||||| |||||||
Sbjct: 82 cgtggtcgcgtccaggtccaacaaggggttgg 113
>52787_ptc-miRf10965-akr:pmrd
Length = 97
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 tgggcgtggacgcgtccaggtccaac 26
||||||||||||||||||||||||||
Sbjct: 28 tgggcgtggacgcgtccaggtccaac 3
>52786_ptc-miRf10964-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 tgggcgtggacgcgtccaggtccaac 26
||||||||||||||||||||||||||
Sbjct: 29 tgggcgtggacgcgtccaggtccaac 4
>54323_ptc-miRf12501-akr:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 gcgtggacgcgtccaggtccaacat 28
|||||||||||||||||||||||||
Sbjct: 1 gcgtggacgcgtccaggtccaacat 25
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 50.1 bits (25), Expect = 4e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 65 gttggaggcggttgcgtccagacccagcatggtgttgggcggggacgagtcca 117
|||||| | ||||||||||||||||| | ||| |||||||| ||||| |||||
Sbjct: 12 gttggacgtggttgcgtccagacccaacgtggggttgggcgcggacgcgtcca 64
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
|||||| |||||||||||||||||||||
Sbjct: 47 tgggcgcggacgcgtccaggtccaacat 74
>52764_ptc-miRf10942-akr:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 gcgtggacgcgtccaggtccaacat 28
|||||||||||||||||||||||||
Sbjct: 100 gcgtggacgcgtccaggtccaacat 76
>52500_ptc-miRf10678-akr:pmrd
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 42 gacgtgcccaggcccaacgtggggttggaggcggttgcgtccagaccca 90
|||||| ||||||||||| | | |||||| | |||||||||||||||||
Sbjct: 77 gacgtgtccaggcccaacctagagttggacgtggttgcgtccagaccca 125
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 50.1 bits (25), Expect = 4e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttggacatggacgtgcccaggcccaacg 60
|||||||||||||||| |||| |||||| ||||||| | ||||| | | || ||||||
Sbjct: 69 tgggcgtggacgcgtctaggtacaacatggggttggtcggggacgcgtctagacccaaca 128
Query: 61 tggggttgg 69
|||||||||
Sbjct: 129 tggggttgg 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttgg 36
|||||||||||||||||||||| ||| | |||||||
Sbjct: 3 tgggcgtggacgcgtccaggtctaacgtggggttgg 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaac 26
|||||||||||| |||||||||||||
Sbjct: 135 tgggcgtggacgtgtccaggtccaac 160
>51865_ptc-miRf10043-akr:pmrd
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 gcgtggacgcgtccaggtccaacat 28
|||||||||||||||||||||||||
Sbjct: 96 gcgtggacgcgtccaggtccaacat 72
>51864_ptc-miRf10042-akr:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 gcgtggacgcgtccaggtccaacat 28
|||||||||||||||||||||||||
Sbjct: 94 gcgtggacgcgtccaggtccaacat 70
>53932_ptc-miRf12110-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 3 tgggcgtggacgcatccaggtccaacat 30
>53931_ptc-miRf12109-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 3 tgggcgtggacgcatccaggtccaacat 30
>53930_ptc-miRf12108-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 3 tgggcgtggacgcatccaggtccaacat 30
>53929_ptc-miRf12107-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 3 tgggcgtggacgcatccaggtccaacat 30
>52428_ptc-miRf10606-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttgg 36
|||||||||||||||||||||| ||| | |||||||
Sbjct: 3 tgggcgtggacgcgtccaggtctaacgtggggttgg 38
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttgg 36
|||||||||||||||||||||| ||| | |||||||
Sbjct: 14 tgggcgtggacgcgtccaggtctaacgtggggttgg 49
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttgg 36
|||||||||||||||| |||| |||||| |||||||
Sbjct: 80 tgggcgtggacgcgtctaggtacaacatggggttgg 115
>52019_ptc-miRf10197-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 80 tgggcgtggacgcatccaggtccaacat 53
>52018_ptc-miRf10196-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 80 tgggcgtggacgcatccaggtccaacat 53
>52017_ptc-miRf10195-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 80 tgggcgtggacgcatccaggtccaacat 53
>52016_ptc-miRf10194-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||| ||||||||||||||
Sbjct: 80 tgggcgtggacgcatccaggtccaacat 53
>53733_ptc-miRf11911-akr:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttggacatggacgtgcccaggcccaa 58
|||||||||||||||||| || || |||||||| || ||||| ||||||||||||
Sbjct: 13 tgggcgtggacgcgtccatcccctacgaagggttgggcagggacgcgcccaggcccaa 70
>53732_ptc-miRf11910-akr:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacatagggttggacatggacgtgcccaggcccaa 58
|||||||||||||||||| || || |||||||| || ||||| ||||||||||||
Sbjct: 13 tgggcgtggacgcgtccatcccctacgaagggttgggcagggacgcgcccaggcccaa 70
>54213_ptc-miRf12391-akr:pmrd
Length = 61
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2 gggcgtggacgcgtccaggtccaac 26
||||||||||||||||| |||||||
Sbjct: 25 gggcgtggacgcgtccacgtccaac 1
>53433_ptc-miRf11611-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
||||||||||||||| |||||||||||
Sbjct: 32 tgggcgtggacgcgtataggtccaacat 59
>52425_ptc-miRf10603-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 7 tggacgcgtccaggtccaacatagggtt 34
|||||| ||||||||||||||| |||||
Sbjct: 1 tggacgtgtccaggtccaacatggggtt 28
>51898_ptc-miRf10076-akr:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1 tgggcgtggacgcgtccaggtccaacat 28
|||||||||||| ||||| |||||||||
Sbjct: 31 tgggcgtggacgtgtccaagtccaacat 4
>51873_ptc-miRf10051-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 7 tggacgcgtccaggtccaacatagggtt 34
|||||| ||||||||||||||| |||||
Sbjct: 1 tggacgtgtccaggtccaacatggggtt 28
