miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54248_ptc-miRf12426-akr:pmrd
Length = 78
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 ctgcagagccagacctaatattcttgggtctgcctgtagagctacacccaatatcattgg 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctgcagagccagacctaatattcttgggtctagctgtagagctacacccaatatcattgg 60
Query: 61 gtctggttgctcatgcag 78
||||||||||||||||||
Sbjct: 61 gtctggttgctcatgcag 78
>53647_ptc-miRf11825-akr:pmrd
Length = 74
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 7 agccagacctaatattcttgggtctgcctgtagagctacacccaatatcattgggtctgg 66
||||||| ||||||||||||||| || || ||||| ||||||||||||||| | |||||
Sbjct: 68 agccagatctaatattcttgggtttggcttcagagccacacccaatatcattagatctgg 9
Query: 67 tt 68
||
Sbjct: 8 tt 7
>53551_ptc-miRf11729-akr:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 5 agagccagacctaatattcttgggtctgcctgtagagctacacccaata 53
||||||||||| ||||| ||||||||| ||| ||||| | ||||||||
Sbjct: 8 agagccagacccaatatccttgggtcttgctgcagagccagacccaata 56
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 ctgcagagccagacctaatattcttgg 27
||||||||||||||| |||| ||||||
Sbjct: 37 ctgcagagccagacccaataatcttgg 63
>52314_ptc-miRf10492-akr:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 acccaatatcattgggtctgg 66
|||||||||||||||||||||
Sbjct: 7 acccaatatcattgggtctgg 27
