miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01000714.1/22462-22345 3694:Populus
trichocarpa
Length = 118
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 ccaatatcattgggtctggttgc 70
|||||||||||||||||||||||
Sbjct: 50 ccaatatcattgggtctggttgc 28
>RF00779;MIR474;AARH01007997.1/197406-197324 3694:Populus
trichocarpa
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 10 cagacctaatattcttgggtctgcctgtagagctacacccaatatc 55
|||||| ||||||||||||| || |||| |||| ||| ||||||||
Sbjct: 52 cagacccaatattcttgggtttggctgtggagccacatccaatatc 7
>RF00779;MIR474;AARH01011344.1/103690-103629 3694:Populus
trichocarpa
Length = 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 agccagacctaatattcttgggtctgcctgtaga 40
|||||||||||||| | ||||||||| |||||||
Sbjct: 34 agccagacctaatagtattgggtctggctgtaga 1
>RF00779;MIR474;AARH01001201.1/24851-24765 3694:Populus
trichocarpa
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 24 ttgggtctgcctgtagagctacacccaatatcattgggtct 64
||||||||||||| | ||| | |||||||||| ||||||||
Sbjct: 72 ttgggtctgcctgcaaagcgagacccaatatccttgggtct 32
>RF00779;MIR474;AARH01001201.1/24773-24847 3694:Populus
trichocarpa
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 24 ttgggtctgcctgtagagctacacccaatatcattgggtct 64
||||||||||||| | ||| | |||||||||| ||||||||
Sbjct: 8 ttgggtctgcctgcaaagcgagacccaatatccttgggtct 48
>RF00779;MIR474;AARH01015450.1/5887-5799 3694:Populus trichocarpa
Length = 89
Score = 42.1 bits (21), Expect = 0.001
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 5 agagccagacctaatattcttgggtctgcctgtagagctacacccaata 53
||||||||||| ||||| ||||||||| ||| ||||| | ||||||||
Sbjct: 57 agagccagacccaatatccttgggtcttgctgcagagccagacccaata 9
