miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01035311.1/279-382 3694:Populus trichocarpa
Length = 104
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 26 cccaaaacacttccaaaaggtgtaatagtgttgggtctggctggtcagccagatcca 82
|||||||||||||||||| ||||||||| ||||||| | ||||| |||||| |||||
Sbjct: 69 cccaaaacacttccaaaatgtgtaatagcgttgggtgtagctggacagccaaatcca 13
>RF00779;MIR474;AARH01016064.1/1684-1788 3694:Populus trichocarpa
Length = 105
Score = 54.0 bits (27), Expect = 3e-07
Identities = 40/43 (93%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 21 tcagacccaaaacacttccaaaaggtgt-aatagtgttgggtc 62
||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct: 63 tcagacccaaaacactttcaaaaggtgtcaatagcgttgggtc 105
>RF00779;MIR474;AARH01008283.1/4922-5043 3694:Populus trichocarpa
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cagacccaaaacacttccaaaagg 45
||||||||||||||||||||||||
Sbjct: 48 cagacccaaaacacttccaaaagg 71
>RF00779;MIR474;AC216460.1/69168-69272 3694:Populus trichocarpa
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tcagacccaaaacacttccaaaa 43
|||||||||||||||||||||||
Sbjct: 63 tcagacccaaaacacttccaaaa 85
>RF00779;MIR474;AARH01004206.1/8671-8776 3694:Populus trichocarpa
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 tcagacccaaaacacttccaaaa 43
|||||||||||||||||||||||
Sbjct: 76 tcagacccaaaacacttccaaaa 54
>RF00779;MIR474;AARH01001024.1/63799-63904 3694:Populus
trichocarpa
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 22 cagacccaaaacacttccaaaag 44
|||||||||||||||||||||||
Sbjct: 75 cagacccaaaacacttccaaaag 53
