miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54334_ptc-miRf12512-akr:pmrd
Length = 73
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2 atcatgtggggaaaacactgtagctttcctcacaaaacattgtggattgctacagtgtct 61
Query: 61 ctccgcatg 69
|||||||||
Sbjct: 62 ctccgcatg 70
>54112_ptc-miRf12290-akr:pmrd
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2 atcatgtggggaaaacactgtagctttcctcacaaaacattgtggattgctacagtgtct 61
Query: 61 ctccgcatggt 71
|||| ||||||
Sbjct: 62 ctccacatggt 72
>53807_ptc-miRf11985-akr:pmrd
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2 atcatgtggggaaaacactgtagctttccttacaaaacattgtggattgctacagtggct 61
Query: 61 ctccgcatggt 71
|||| ||||||
Sbjct: 62 ctccacatggt 72
>52756_ptc-miRf10934-akr:pmrd
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 2 atcatgtggggaaaacattgtagctttcctcacaaaacattgtggattgctacagtgtat 61
Query: 61 ctccgcatggt 71
|||| ||||||
Sbjct: 62 ctccacatggt 72
>53998_ptc-miRf12176-akr:pmrd
Length = 73
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 4 atgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtctctc 63
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagctttgctcataaaacattgtggattgctacagtgtctctc 64
Query: 64 cgcatggt 71
||||||||
Sbjct: 65 cgcatggt 72
>53908_ptc-miRf12086-akr:pmrd
Length = 73
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 4 atgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtctctc 63
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagctttgctcataaaacattgtggattgctacagtgtctctc 64
Query: 64 cgcatggt 71
||||||||
Sbjct: 65 cgcatggt 72
>52905_ptc-miRf11083-akr:pmrd
Length = 73
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 4 atgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtctctc 63
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagctttgctcataaaacattgtggattgctacagtgtctctc 64
Query: 64 cgcatggt 71
||||||||
Sbjct: 65 cgcatggt 72
>53536_ptc-miRf11714-akr:pmrd
Length = 88
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct: 10 atcatgtggggaaagcattgtagctttcctcataaaacattgtggattgctacagtgttt 69
Query: 61 ctccgcatggt 71
|||||||||||
Sbjct: 70 ctccgcatggt 80
>54326_ptc-miRf12504-akr:pmrd
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| || |||||||||||| |||||||||| |||||||||| |||||||
Sbjct: 2 atcatgtggggaaagcactgtagctttcctcacaaaacattatggattgctatagtgtct 61
Query: 61 ctccgcatggt 71
|||||||||||
Sbjct: 62 ctccgcatggt 72
>54100_ptc-miRf12278-akr:pmrd
Length = 87
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| |||||||||||| || | ||||||||||||||||||||| |||||
Sbjct: 9 atcatgtggggaaagcattgtagctttgctcataaaacattgtggattgctacaatgtct 68
Query: 61 ctccgcatggt 71
|||||||||||
Sbjct: 69 ctccgcatggt 79
>53974_ptc-miRf12152-akr:pmrd
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||
Sbjct: 2 atcatgtggggaaaacactgtagctttcctcacaaaacattatggattgctatagtgtct 61
Query: 61 ctccgcatggt 71
|||| ||||||
Sbjct: 62 ctccacatggt 72
>53776_ptc-miRf11954-akr:pmrd
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
||||||||||||||||||||||||||| || | |||| ||||||||||||||||||||||
Sbjct: 2 atcatgtggggaaaacattgtagctttgctcataaaatattgtggattgctacagtgtct 61
Query: 61 ctccgcatggt 71
|||||| ||||
Sbjct: 62 ctccgcgtggt 72
>53126_ptc-miRf11304-akr:pmrd
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2 atcatgtggggaaagcactgtagctttcctcacaaaacattgtggattgctacagtgtct 61
Query: 61 ctc 63
|||
Sbjct: 62 ctc 64
>52932_ptc-miRf11110-akr:pmrd
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| || |||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 2 atcatgtggggaaagcactgtagctttcctcacaaaacattgtagattgctacagtgtct 61
Query: 61 ctccgcatggt 71
|||| ||||||
Sbjct: 62 ctccacatggt 72
>52685_ptc-miRf10863-akr:pmrd
Length = 73
Score = 99.6 bits (50), Expect = 2e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 4 atgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtctctc 63
||||||||||| || ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 5 atgtggggaaagcactgtagcttttctcacaaaacattgtggattgctacagtgtctctc 64
Query: 64 cgcatg 69
||||||
Sbjct: 65 cgcatg 70
>53729_ptc-miRf11907-akr:pmrd
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 2 atcatgtggggaaagcactgtagctttcctaacaaaacattgtggattgctatagtgtct 61
Query: 61 ctccgcatg 69
|||| ||||
Sbjct: 62 ctccacatg 70
>53745_ptc-miRf11923-akr:pmrd
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| || |||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 2 atcatgtggggaaagcactgtagctttcctcacaaaacattatggattgctacagtgtct 61
Query: 61 ctcc 64
||||
Sbjct: 62 ctcc 65
>53979_ptc-miRf12157-akr:pmrd
Length = 73
Score = 93.7 bits (47), Expect = 2e-20
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 2 atcatgtggggaaaacactgtagctttactcacaaaatattgtggattgctacagtgtct 61
Query: 61 ctc 63
|||
Sbjct: 62 ctc 64
>51853_ptc-miRf10031-akr:pmrd
Length = 73
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgtct 60
|||||||||||||| || ||||| |||||| |||||||||||||||| ||||||||||||
Sbjct: 2 atcatgtggggaaagcactgtagatttcctcacaaaacattgtggatagctacagtgtct 61
Query: 61 ctccgcatggt 71
|||| ||||||
Sbjct: 62 ctccacatggt 72
>53055_ptc-miRf11233-akr:pmrd
Length = 84
Score = 87.7 bits (44), Expect = 9e-19
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagt 56
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 7 atcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
>52744_ptc-miRf10922-akr:pmrd
Length = 71
Score = 85.7 bits (43), Expect = 4e-18
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 4 atgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgt 58
||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 atgtggggaaagcactgtagctttcctcacaaaacattgtggattgctacagtgt 58
>53148_ptc-miRf11326-akr:pmrd
Length = 88
Score = 77.8 bits (39), Expect = 9e-16
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 4 atgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgt 58
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct: 12 atgtggggaaaacactgtagctttccttacaaattactgtggattgctacagtgt 66
>52748_ptc-miRf10926-akr:pmrd
Length = 75
Score = 61.9 bits (31), Expect = 5e-11
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 4 atgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgt 58
|||||||| || || |||||||||||| |||||||||||||||||| || |||||
Sbjct: 6 atgtggggtaagcactgtagctttcctcacaaaacattgtggattgttatagtgt 60
>52443_ptc-miRf10621-akr:pmrd
Length = 152
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 tgtggattgctacagtgtctctccgcatg 69
|||||||||||||||||||||||||||||
Sbjct: 1 tgtggattgctacagtgtctctccgcatg 29
>52007_ptc-miRf10185-akr:pmrd
Length = 156
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttcc 29
|||||||||||||||||||||||||||||
Sbjct: 125 atcatgtggggaaaacattgtagctttcc 153
>53549_ptc-miRf11727-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagtgt 58
||||||||||||| || |||||||||| | |||||||| ||| |||||||||||||
Sbjct: 7 atcatgtggggaag-cactgtagctttcatcacaaaacacggtgaattgctacagtgt 63
>53067_ptc-miRf11245-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 19 tgtagctttccttacaaaacattgtggattgctacagtgt 58
|||||||||| | |||||||| | || |||||||||||||
Sbjct: 24 tgtagctttcatcacaaaacactatgaattgctacagtgt 63
