miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 61.9 bits (31), Expect = 8e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 44 aattctcttcggtctagcgtcaggacccaagggtgatgggtcatgca 90
||||||||| ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 42 aattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 88
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 61.9 bits (31), Expect = 8e-11
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 44 aattctcttcggtctagcgtcaggacccaagggtgatgggtcatgca 90
||||||||| ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 47 aattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 1
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 61.9 bits (31), Expect = 8e-11
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 44 aattctcttcggtctagcgtcaggacccaagggtgatgggtcatgca 90
||||||||| ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 47 aattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 1
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 61.9 bits (31), Expect = 8e-11
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 44 aattctcttcggtctagcgtcaggacccaagggtgatgggtcatgca 90
||||||||| ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 47 aattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 1
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 49 tcttcggtctagcgtcaggacccaagggtgatgggtcatgca 90
|||| ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 42
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 aattctcttcggtctagcgtcaggacccaagg 75
||||||||| ||||| ||||||||||||||||
Sbjct: 79 aattctcttgggtctggcgtcaggacccaagg 110
>54217_ptc-miRf12395-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tgtcaggacccatttcgcttgggtcct 31
|||||||||||| ||||||||||||||
Sbjct: 7 tgtcaggacccaattcgcttgggtcct 33
>52177_ptc-miRf10355-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 tgtcaggacccatttcgcttgggtcct 31
|||||||||||| ||||||||||||||
Sbjct: 93 tgtcaggacccaattcgcttgggtcct 67
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cctgtgtcaggacccatttcgcttgggtcc 30
|||||||||||||||| ||| |||||||||
Sbjct: 59 cctgtgtcaggacccaattctcttgggtcc 88
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cctgtgtcaggacccatttcgcttgggtcc 30
|||||||||||||||| ||| |||||||||
Sbjct: 59 cctgtgtcaggacccaattctcttgggtcc 88
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cctgtgtcaggacccatttcgcttgggtcc 30
|||||||||||||||| ||| |||||||||
Sbjct: 52 cctgtgtcaggacccaattctcttgggtcc 81
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 19 tcgcttgggtcctacctctgggccaaattctcttcggtctagcgtcaggacccaagg 75
||||||||||||| | || || | ||||||||| |||| ||||| |||||||||||
Sbjct: 64 tcgcttgggtcctgcgtcaggatccaattctcttgggtccagcgttaggacccaagg 120
>52337_ptc-miRf10515-akr:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11 gacccatttcgcttgggtcct 31
|||||||||||||||||||||
Sbjct: 78 gacccatttcgcttgggtcct 58
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 44 aattctcttcggtctagcgtcaggacccaagggtgatgggtcatgcatcagg 95
||||||||| |||| |||||| | |||| |||||||||||| ||||||||
Sbjct: 15 aattctcttgggtccggcgtcaaaatccaatggtgatgggtcacgcatcagg 66
>54156_ptc-miRf12334-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 60 gcgtcaggacccaagggtgatgggtcatgcatcagg 95
||||||||||||||||| ||||||| ||| |||||
Sbjct: 19 gcgtcaggacccaagggcaatgggtcttgcgtcagg 54
>53373_ptc-miRf11551-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 60 gcgtcaggacccaagggtgatgggtcatgcatcagg 95
||||||||||||||||| ||||||| ||| |||||
Sbjct: 36 gcgtcaggacccaagggcaatgggtcttgcgtcagg 1
>52558_ptc-miRf10736-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 60 gcgtcaggacccaagggtgatgggtcatgcatcagg 95
||||||||||||||||| ||||||| ||| |||||
Sbjct: 65 gcgtcaggacccaagggcaatgggtcttgcgtcagg 100
