miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51805_ptc-miR481e:pmrd
Length = 196
Score = 93.7 bits (47), Expect = 4e-20
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 81 gagattcgaacttgtgaccgctttgtcattaaagctctgataccatgtcaaagaaccatc 140
|||||||||||| |||||| ||| ||||| || |||||||||||||||||||||| ||||
Sbjct: 100 gagattcgaactcgtgaccacttggtcatcaaggctctgataccatgtcaaagaatcatc 41
Query: 141 tcaacctaatagctt 155
|||||| ||||||||
Sbjct: 40 tcaacccaatagctt 26
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 11 gttgagatggttctttgacatggtatcaaagccttgat 48
||||||||| |||||||||||||||||| |||||||||
Sbjct: 36 gttgagatgattctttgacatggtatcagagccttgat 73
>51803_ptc-miR481c:pmrd
Length = 195
Score = 93.7 bits (47), Expect = 4e-20
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 81 gagattcgaacttgtgaccgctttgtcattaaagctctgataccatgtcaaagaaccatc 140
|||||||||||| |||||||||| ||||| |||||||||||| |||||||||||| ||||
Sbjct: 100 gagattcgaactcgtgaccgcttggtcatcaaagctctgatatcatgtcaaagaatcatc 41
Query: 141 tcaacctaatagctt 155
|||||| || |||||
Sbjct: 40 tcaacccaaaagctt 26
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 11 gttgagatggttctttgacatggtatcaaagccttgat 48
||||||||| |||||||||||| ||||| ||| |||||
Sbjct: 36 gttgagatgattctttgacatgatatcagagctttgat 73
>53491_ptc-miRf11669-akr:pmrd
Length = 167
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 100 gctttgtcattaaagctctgataccatgtcaaagaaccatctcaacctaata 151
|||| ||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gcttggtcatcaaggctctgataccatgttaaagaaccatctcaacctaata 52
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 5 tattaagttgagatggttctttgacatggtatcaaagccttgat 48
||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct: 52 tattaggttgagatggttctttaacatggtatcagagccttgat 9
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 17 atggttctttgacatggtatcaaagccttgataa 50
|||||||||||||||||||||| |||||||||||
Sbjct: 128 atggttctttgacatggtatcagagccttgataa 161
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 114 gctctgataccatgtcaaagaaccat 139
||||||||||||||||||||||||||
Sbjct: 153 gctctgataccatgtcaaagaaccat 128
>54258_ptc-miRf12436-akr:pmrd
Length = 165
Score = 69.9 bits (35), Expect = 5e-13
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 105 gtcattaaagctctgataccatgtcaaagaaccatctcaacctaata 151
||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 161 gtcatcaaggctctgataccatgttaaagaaccatctcaacctaata 115
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 5 tattaagttgagatggttctttgacatggtatcaaagccttgat 48
||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct: 115 tattaggttgagatggttctttaacatggtatcagagccttgat 158
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 17 atggttctttgacatggtatcaaagccttgataa 50
|||||||||||||||||||||| |||||||||||
Sbjct: 39 atggttctttgacatggtatcagagccttgataa 6
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 114 gctctgataccatgtcaaagaaccat 139
||||||||||||||||||||||||||
Sbjct: 14 gctctgataccatgtcaaagaaccat 39
>51802_ptc-miR481b:pmrd
Length = 220
Score = 69.9 bits (35), Expect = 5e-13
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 81 gagattcgaacttgtgaccgctttgtcattaaagctctgataccatgtcaaagaaccatc 140
||||||| |||| | |||| ||| || || || ||||||||| |||||||||||||||||
Sbjct: 100 gagattcaaactcgagaccacttggttatcaaggctctgatatcatgtcaaagaaccatc 41
Query: 141 tcaacctaatagctt 155
|||||| ||||||||
Sbjct: 40 tcaacccaatagctt 26
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 11 gttgagatggttctttgacatggtatcaaagccttgataa 50
|||||||||||||||||||||| ||||| |||||||||||
Sbjct: 36 gttgagatggttctttgacatgatatcagagccttgataa 75
>54042_ptc-miRf12220-akr:pmrd
Length = 123
Score = 65.9 bits (33), Expect = 8e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 99 cgctttgtcattaaagctctgataccatgtcaaagaaccatctcaacctaatagctt 155
||||| ||||| || ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 1 cgcttcgtcatcaaggctctgatatcatgtcaaggaaccatctcaacccaatagctt 57
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 11 gttgagatggttctttgacatggtatcaaagccttgat 48
||||||||||||| |||||||| ||||| |||||||||
Sbjct: 47 gttgagatggttccttgacatgatatcagagccttgat 10
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 21 ttctttgacatggtatcaaagccttgat 48
|||||||||||||||||| |||||||||
Sbjct: 87 ttctttgacatggtatcagagccttgat 114
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 105 gtcattaaagctctgataccatgtcaaagaa 135
||||| || ||||||||||||||||||||||
Sbjct: 117 gtcatcaaggctctgataccatgtcaaagaa 87
>53218_ptc-miRf11396-akr:pmrd
Length = 119
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 105 gtcattaaagctctgataccatgtcaaagaaccatctcaacctaatagctt 155
||||| || ||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 115 gtcatcaaggctctgatatcatgtcaaggaaccatctcaacccaatagctt 65
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 11 gttgagatggttctttgacatggtatcaaagccttgat 48
||||||||||||| |||||||| ||||| |||||||||
Sbjct: 75 gttgagatggttccttgacatgatatcagagccttgat 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 21 ttctttgacatggtatcaaagccttgat 48
|||||||||||||||||| |||||||||
Sbjct: 35 ttctttgacatggtatcagagccttgat 8
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 105 gtcattaaagctctgataccatgtcaaagaa 135
||||| || ||||||||||||||||||||||
Sbjct: 5 gtcatcaaggctctgataccatgtcaaagaa 35
>53364_ptc-miRf11542-akr:pmrd
Length = 82
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 12 ttgagatggttctttgacatggtatcaaag 41
||||||||||||||||||||||||||||||
Sbjct: 30 ttgagatggttctttgacatggtatcaaag 1
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 118 tgataccatgtcaaagaaccatctcaacctaa 149
||||||||||||||||||||||||||| ||||
Sbjct: 4 tgataccatgtcaaagaaccatctcaatctaa 35
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 124 catgtcaaagaaccatctcaacc 146
|||||||||||||||||||||||
Sbjct: 73 catgtcaaagaaccatctcaacc 51
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 gttgagatggttctttgacatggtatcaaag 41
|||||||||||||||||||||| || |||||
Sbjct: 52 gttgagatggttctttgacatgatagcaaag 82
