miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53008_ptc-miRf11186-akr:pmrd
Length = 166
Score = 85.7 bits (43), Expect = 6e-18
Identities = 81/91 (89%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 13 ttgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgctgctgaattgt 72
|||||||| |||||||||||| |||| ||||||| |||||||| |||||||| |||||||
Sbjct: 162 ttgtgattcgctgccgaaactaagttgtctgcagcgaattagctttcgctgcggaattgt 103
Query: 73 gt-ttc-acagcgaatttgtgattcgctgcc 101
|| ||| ||||||||||||||||| |||||
Sbjct: 102 gtgttctgcagcgaatttgtgattcactgcc 72
Score = 46.1 bits (23), Expect = 5e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 13 ttgtgatttgctgccgaaactgagttctctgcagtgaattagcattc 59
|||||||| ||| |||||||||||| ||||||| ||||||| ||||
Sbjct: 47 ttgtgattcactgtcgaaactgagttgtctgcagcgaattagaattc 1
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 gaatttgtgattcgctgccga 103
|||||||||||||||||||||
Sbjct: 166 gaatttgtgattcgctgccga 146
Score = 40.1 bits (20), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 1 tctgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaatt 52
||||||||||| |||||||| ||||| || |||||| |||||| ||||||
Sbjct: 98 tctgcagcgaatttgtgattcactgccaaagttgagttgtctgcaatgaatt 47
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 83.8 bits (42), Expect = 2e-17
Identities = 88/102 (86%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 3 tgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgct 62
|||||||||| ||||||| ||||||||||||| || |||||| ||||||||||||||
Sbjct: 49 tgcagcgaaactgtgattcgctgccgaaactgcgtcggctgcagcaaattagcattcgct 108
Query: 63 gctgaat-tgtgtttcacagcgaatttgtgattcgctgccga 103
|| ||| |||||| |||||||||||||||||||||||||
Sbjct: 109 gccgaaactgtgttgtgcagcgaatttgtgattcgctgccga 150
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 3 tgcagcgaaattgtgatttgctgccgaaactgagt 37
||||||||| |||||||| ||||||||||||||||
Sbjct: 124 tgcagcgaatttgtgattcgctgccgaaactgagt 158
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 31 actgagttctctgcagtgaattagcattcgctgctgaattgtgt 74
||||||| ||||||| |||||||||||||||| |||||||||
Sbjct: 1 actgagtcttctgcagcgaattagcattcgctgtcgaattgtgt 44
>54190_ptc-miRf12368-akr:pmrd
Length = 143
Score = 79.8 bits (40), Expect = 4e-16
Identities = 76/84 (90%), Gaps = 3/84 (3%)
Strand = Plus / Minus
Query: 22 gctgccgaaactgagttctctgcagtgaattagcattcgctgctgaattgtgt-ttc-ac 79
|||||| ||||||||||| |||||| ||||||||||||||||| ||||||||| ||| |
Sbjct: 141 gctgccaaaactgagttc-ctgcagcgaattagcattcgctgccgaattgtgtgttctgc 83
Query: 80 agcgaatttgtgattcgctgccga 103
|||||| |||||||||||||||||
Sbjct: 82 agcgaagttgtgattcgctgccga 59
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 3 tgcagcgaaattgtgatttgctgccgaaactgagttc 39
||||||||| ||| |||| ||||||||||||||||||
Sbjct: 46 tgcagcgaatttgcgattcgctgccgaaactgagttc 10
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 tctgcagcgaaattgtgatttgctgccgaa 30
||||||||||| |||||||| |||||||||
Sbjct: 87 tctgcagcgaagttgtgattcgctgccgaa 58
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 79 cagcgaatttgtgattcgctgccga 103
||||||||||| |||||||||||||
Sbjct: 44 cagcgaatttgcgattcgctgccga 20
>52242_ptc-miRf10420-akr:pmrd
Length = 144
Score = 77.8 bits (39), Expect = 1e-15
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 5 cagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgctgc 64
|||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 82 cagcgaaattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
Query: 65 tga 67
|||
Sbjct: 142 tga 144
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 acagcgaatttgtgattcgctgccga 103
|||||||| |||||||||||||||||
Sbjct: 81 acagcgaaattgtgattcgctgccga 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 tctgcagtgaattagcattcgctgctgaa 68
||||||| ||||||| |||||||||||||
Sbjct: 1 tctgcagcgaattagaattcgctgctgaa 29
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 71.9 bits (36), Expect = 9e-14
Identities = 66/75 (88%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 31 actgagttctctgcagtgaattagcattcgctgctgaattgtgtttca--cagcgaattt 88
|||||||| ||||||| ||||||||||||||||| ||||||||| | ||||||| ||
Sbjct: 1 actgagttgtctgcagcgaattagcattcgctgccgaattgtgtgttgtgcagcgaaatt 60
Query: 89 gtgattcgctgccga 103
|||||||||||||||
Sbjct: 61 gtgattcgctgccga 75
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 3 tgcagcgaaattgtgatttgctgccgaaactgagt 37
|||||||||||||||||| ||||||||||||||||
Sbjct: 49 tgcagcgaaattgtgattcgctgccgaaactgagt 83
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 69.9 bits (35), Expect = 3e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 4 gcagcgaaattgtgatttgctgccgaaactgagttctctgcag 46
||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 43 gcagcgaaattgtgattcgctgccgaaactgagttgtctgcag 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 55/65 (84%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 41 ctgcagtgaattagcattcgctgctgaattg--tgtttcacagcgaatttgtgattcgct 98
||||||||||||| || ||| ||| |||||| |||| ||||||| ||||||||||||
Sbjct: 4 ctgcagtgaattaacagtcgttgccgaattggatgttcagcagcgaaattgtgattcgct 63
Query: 99 gccga 103
|||||
Sbjct: 64 gccga 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tctgcagcgaaattgtgatttgctgc 26
|||||||||||||||||||| |||||
Sbjct: 79 tctgcagcgaaattgtgattcgctgc 104
>53359_ptc-miRf11537-akr:pmrd
Length = 114
Score = 67.9 bits (34), Expect = 1e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 1 tctgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaa 50
||||||| |||||||||||| |||||||||| |||||| |||||||||||
Sbjct: 7 tctgcagtgaaattgtgattcgctgccgaaattgagttgtctgcagtgaa 56
>52355_ptc-miRf10533-akr:pmrd
Length = 112
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 3 tgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgct 62
|||||||||| | ||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct: 7 tgcagcgaaactctgattcactgccgaaactgagtcttctgcagcgaattagcattcgct 66
Query: 63 gc 64
||
Sbjct: 67 gc 68
Score = 61.9 bits (31), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 22 gctgccgaaactgagttctctgcagtgaattagcattcgctgc 64
|||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 64 gctgccgaaactgagtcttctgcagcgaattagcattcgctgc 106
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 65.9 bits (33), Expect = 5e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 4 gcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcg 60
||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||
Sbjct: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 cagcgaatttgtgattcgctgccga 103
||||||| |||||||||||||||||
Sbjct: 7 cagcgaaattgtgattcgctgccga 31
>53387_ptc-miRf11565-akr:pmrd
Length = 109
Score = 65.9 bits (33), Expect = 5e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 4 gcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcg 60
||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||
Sbjct: 6 gcagcgaaattgtgattcgctgccgaaactgtgtcggctgcagtgaattaacattcg 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 cagcgaatttgtgattcgctgccga 103
||||||| |||||||||||||||||
Sbjct: 7 cagcgaaattgtgattcgctgccga 31
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 63.9 bits (32), Expect = 2e-11
Identities = 89/104 (85%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 3 tgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgct 62
|||||||||| | ||||| ||||||||||||| || |||||| |||||||||||||||
Sbjct: 7 tgcagcgaaactctgattcgctgccgaaactgtgtcagctgcagcgaattagcattcgct 66
Query: 63 gctg-aattgtgtt-tc-acagcgaatttgtgattcgctgccga 103
|| | || || ||| || |||||||||||||||||||||||||
Sbjct: 67 gccgaaactgagttgtctgcagcgaatttgtgattcgctgccga 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tctgcagcgaaattgtgatttgctgccgaaac 32
||||||||||| |||||||| |||||||||||
Sbjct: 82 tctgcagcgaatttgtgattcgctgccgaaac 113
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 61.9 bits (31), Expect = 8e-11
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 43 gcagtgaattagcattcgctgctgaattgtgt-ttc-acagcgaatttgtgattcgctgc 100
|||| ||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||
Sbjct: 9 gcagcgaattagcattcgctgccgaattgtgtgttctgcagcgaaattgtgattcgctgc 68
Query: 101 cga 103
|||
Sbjct: 69 cga 71
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tctgcagcgaaattgtgatttgctgccgaaact 33
|||||||||||||||||||| ||||||||||||
Sbjct: 43 tctgcagcgaaattgtgattcgctgccgaaact 75
>52207_ptc-miRf10385-akr:pmrd
Length = 112
Score = 61.9 bits (31), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 22 gctgccgaaactgagttctctgcagtgaattagcattcgctgc 64
|||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 64 gctgccgaaactgagtcttctgcagcgaattagcattcgctgc 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 tgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgct 62
|||||||||| | ||||| |||||||||||| || |||||| |||||||||||||||
Sbjct: 7 tgcagcgaaactctgattcactgccgaaactgtgtcagctgcagcgaattagcattcgct 66
Query: 63 gc 64
||
Sbjct: 67 gc 68
>54030_ptc-miRf12208-akr:pmrd
Length = 79
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 33 tgagttctctgcagtgaattagcattcgctgctgaattgtgt 74
|||||| | ||||| |||||||||||||||||||||||||||
Sbjct: 1 tgagttgtttgcagcgaattagcattcgctgctgaattgtgt 42
>54142_ptc-miRf12320-akr:pmrd
Length = 75
Score = 58.0 bits (29), Expect = 1e-09
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 43 gcagtgaattagcattcgctgctgaattgtgt-ttca-cagcgaatttgtgattcgctgc 100
|||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct: 9 gcagcgaattagcattcgctgccaaattgtgtgttctgcagcgaatttgtgattcgctgc 68
Query: 101 c 101
|
Sbjct: 69 c 69
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 tctgcagcgaaattgtgatttgctgccgaaact 33
||||||||||| |||||||| |||||| |||||
Sbjct: 43 tctgcagcgaatttgtgattcgctgccaaaact 75
>52237_ptc-miRf10415-akr:pmrd
Length = 147
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tctgcagcgaaattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcg 60
||||||||||| || | |||| ||||||||| |||||| | ||||| ||||||| |||||
Sbjct: 80 tctgcagcgaa-ttataattttctgccgaaattgagttgtttgcagcgaattagtattcg 138
Query: 61 ctgctgaat 69
|||||||||
Sbjct: 139 ctgctgaat 147
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 22 gctgccgaaactgagttctctgcagtgaattagcattcgctg 63
|||||||||| |||||| |||| || ||||||||||||||||
Sbjct: 66 gctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
>52815_ptc-miRf10993-akr:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 22 gctgccgaaactgagttctctgcagtgaattagcattcgctg 63
|||||||||| |||||| |||| || ||||||||||||||||
Sbjct: 66 gctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
>52615_ptc-miRf10793-akr:pmrd
Length = 76
Score = 52.0 bits (26), Expect = 8e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 aattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgctgc 64
|||||||||| ||||||||||| ||||| ||||| | |||| ||| ||||||||
Sbjct: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 cagcgaatttgtgattcgctgccga 103
|||||||||||||||||||||||||
Sbjct: 40 cagcgaatttgtgattcgctgccga 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 22 gctgccgaaactgagttctctgcagtgaattag-cattcgctgctgaattgtgt 74
||||||||||| ||||| ||||||| ||||| | ||||||||| |||||||||
Sbjct: 18 gctgccgaaacggagttgtctgcagcgaatttgtgattcgctgccgaattgtgt 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tctgcagcgaaattgtgatttgctgccgaa 30
||||||||||| |||||||| |||||||||
Sbjct: 36 tctgcagcgaatttgtgattcgctgccgaa 65
