miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52787_ptc-miRf10965-akr:pmrd
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 2 gggttggacctggacgcgtccacgcccagcttggggttaggtctggcgcgtccacgccca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggttggacctggacgcgtccacgcccagcttggggttaggtctggcgcgtccacgccca 60
Query: 62 ttcccaagttggggctagacccgtccatgcccaatct 98
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcccaagttggggctagacccgtccatgcccaatct 97
>52728_ptc-miRf10906-akr:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
||||||||||||||||||||||||||
Sbjct: 26 gttggacctggacgcgtccacgccca 1
>52009_ptc-miRf10187-akr:pmrd
Length = 113
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
||||||||||||||||||||||||||
Sbjct: 38 gttggacctggacgcgtccacgccca 13
>54323_ptc-miRf12501-akr:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgc 26
|||||||||||||||||||||||
Sbjct: 23 gttggacctggacgcgtccacgc 1
>52764_ptc-miRf10942-akr:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgc 26
|||||||||||||||||||||||
Sbjct: 78 gttggacctggacgcgtccacgc 100
>51865_ptc-miRf10043-akr:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgc 26
|||||||||||||||||||||||
Sbjct: 74 gttggacctggacgcgtccacgc 96
>51864_ptc-miRf10042-akr:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgc 26
|||||||||||||||||||||||
Sbjct: 72 gttggacctggacgcgtccacgc 94
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
||||||||||||||||||| ||||||
Sbjct: 72 gttggacctggacgcgtccgcgccca 47
>53953_ptc-miRf12131-akr:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
||||| ||||||||||||||||||||
Sbjct: 41 gttgggcctggacgcgtccacgccca 16
>53932_ptc-miRf12110-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 28 gttggacctggatgcgtccacgccca 3
>53931_ptc-miRf12109-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 28 gttggacctggatgcgtccacgccca 3
>53930_ptc-miRf12108-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 28 gttggacctggatgcgtccacgccca 3
>53929_ptc-miRf12107-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 28 gttggacctggatgcgtccacgccca 3
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
||||| ||||||||||||||||||||
Sbjct: 36 gttgggcctggacgcgtccacgccca 11
>53604_ptc-miRf11782-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 66 caagttggggctagacccgtccatgcccaa 95
|||||||||| ||||| |||||||||||||
Sbjct: 33 caagttggggttagacgcgtccatgcccaa 4
>52885_ptc-miRf11063-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 66 caagttggggctagacccgtccatgcccaa 95
|||||||||| ||||| |||||||||||||
Sbjct: 33 caagttggggttagacgcgtccatgcccaa 4
>52428_ptc-miRf10606-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 gacctggacgcgtccacgccca 29
||||||||||||||||||||||
Sbjct: 24 gacctggacgcgtccacgccca 3
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 gacctggacgcgtccacgccca 29
||||||||||||||||||||||
Sbjct: 35 gacctggacgcgtccacgccca 14
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 gacctggacgcgtccacgccca 29
||||||||||||||||||||||
Sbjct: 24 gacctggacgcgtccacgccca 3
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 gttggacctggacgcgtccacgccca 29
||||||||||||| ||||||||||||
Sbjct: 160 gttggacctggacacgtccacgccca 135
>52019_ptc-miRf10197-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 55 gttggacctggatgcgtccacgccca 80
>52018_ptc-miRf10196-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 55 gttggacctggatgcgtccacgccca 80
>52017_ptc-miRf10195-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 55 gttggacctggatgcgtccacgccca 80
>52016_ptc-miRf10194-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgccca 29
|||||||||||| |||||||||||||
Sbjct: 55 gttggacctggatgcgtccacgccca 80
>54213_ptc-miRf12391-akr:pmrd
Length = 61
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 gttggacctggacgcgtccacgccc 28
||||||| |||||||||||||||||
Sbjct: 1 gttggacgtggacgcgtccacgccc 25
>53652_ptc-miRf11830-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ctggacgcgtccacgcccagcttgg 35
|||||| ||||||||||||||||||
Sbjct: 29 ctggacacgtccacgcccagcttgg 5
>53650_ptc-miRf11828-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ctggacgcgtccacgcccagcttgg 35
|||||| ||||||||||||||||||
Sbjct: 29 ctggacacgtccacgcccagcttgg 5
>52734_ptc-miRf10912-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ctggacgcgtccacgcccagcttgg 35
|||||| ||||||||||||||||||
Sbjct: 3 ctggacacgtccacgcccagcttgg 27
>52733_ptc-miRf10911-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ctggacgcgtccacgcccagcttgg 35
|||||| ||||||||||||||||||
Sbjct: 3 ctggacacgtccacgcccagcttgg 27
>53421_ptc-miRf11599-akr:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 gtccacgcccattcccaagttggg 74
||||||||||| ||||||||||||
Sbjct: 52 gtccacgcccactcccaagttggg 75
>51936_ptc-miRf10114-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 46 ggcgcgtccacgcccattcccaagttggggctagac 81
|||||||||||||||| |||||| |||||||||||
Sbjct: 6 ggcgcgtccacgcccaaccccaag-tggggctagac 40
