miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51752_ptc-miR399f:pmrd
Length = 101
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggcaaaacagaaatatgcaggcatttatttccatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gaatggcagggcaattctcctttggcaaaacagaaatatgcaggcatttatttccatgtt 39
Query: 61 ctgtttgccaaaggaggataaagccctgttattc 94
||||||||||||||||||||||||||||||||||
Sbjct: 38 ctgtttgccaaaggaggataaagccctgttattc 5
>54884_vvi-miR399h:pmrd
Length = 90
Score = 75.8 bits (38), Expect = 5e-15
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggcaaaacagaaatatgca 42
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 86 gaatggcagggcaattctcctttggcaaaacagaagtatgca 45
>55091_zma-miR399a:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggcaa 28
||||||||||||||||||||||||||||
Sbjct: 110 gaatggcagggcaattctcctttggcaa 83
>54496_sbi-miR399h:pmrd
Length = 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||||||||||||||||||||||||||
Sbjct: 119 gaatggcagggcaattctcctttggca 93
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gaatggcagggcaattctcctttggca 27
|||||||||||||||||||||||||||
Sbjct: 2 gaatggcagggcaattctcctttggca 28
>51753_ptc-miR399g:pmrd
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||||||||||||||||||||||||||
Sbjct: 91 gaatggcagggcaattctcctttggca 65
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||||||||||||||||||||||||||
Sbjct: 105 gaatggcagggcaattctcctttggca 79
>48965_osa-miR399b:pmrd
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||||||||||||||||||||||||||
Sbjct: 93 gaatggcagggcaattctcctttggca 67
>48752_mtr-miR399c:pmrd
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 2 aatggcagggcaattctcctttggcaaaacagaaa 36
||||||||||||| |||||||||||||| ||||||
Sbjct: 105 aatggcagggcaaatctcctttggcaaaccagaaa 71
>54498_sbi-miR399j:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 5 ggcagggcaattctcctttggcaa 28
||||||||||||||||||||||||
Sbjct: 93 ggcagggcaattctcctttggcaa 70
>55093_zma-miR399c:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||| ||||||||||||||||||||||
Sbjct: 194 gaatcgcagggcaattctcctttggca 168
>54491_sbi-miR399c:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||| ||||||||||||||||||||||
Sbjct: 117 gaatcgcagggcaattctcctttggca 91
>54489_sbi-miR399a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||| ||||||||||||||||||||||
Sbjct: 124 gaatcgcagggcaattctcctttggca 98
>48966_osa-miR399c:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 gaatggcagggcaattctcctttggca 27
|||| ||||||||||||||||||||||
Sbjct: 106 gaatcgcagggcaattctcctttggca 80
>55102_zma-miR399l:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 cagggcaattctcctttggcaa 28
||||||||||||||||||||||
Sbjct: 85 cagggcaattctcctttggcaa 64
>48964_osa-miR399a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gcagggcaattctcctttggca 27
||||||||||||||||||||||
Sbjct: 140 gcagggcaattctcctttggca 119
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 cagggcaattctcctttggca 27
|||||||||||||||||||||
Sbjct: 168 cagggcaattctcctttggca 148
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 cagggcaattctcctttggca 27
|||||||||||||||||||||
Sbjct: 87 cagggcaattctcctttggca 67
>48513_ghr-miR399b:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7 cagggcaattctcctttggcaaaa 30
|||||||| |||||||||||||||
Sbjct: 77 cagggcaaatctcctttggcaaaa 54
>48316_bdi-miR399:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4 tggcagggcaattctcctttggca 27
|||||||| |||||||||||||||
Sbjct: 96 tggcagggtaattctcctttggca 73
