miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52958_ptc-miRf11136-akr:pmrd
Length = 75
Score = 81.8 bits (41), Expect = 7e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 6 caagccaaagcgccacctggtgcttggactgcagccaagaggaagcagtccaagcgcccc 65
|||| ||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| |
Sbjct: 1 caagtcaaagcgccacctggggcttggactacagcgaagaggaagcaggccaagcgccac 60
Query: 66 atggcgctt 74
||||||||
Sbjct: 61 gtggcgctt 69
>53960_ptc-miRf12138-akr:pmrd
Length = 91
Score = 75.8 bits (38), Expect = 4e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 gtgcccaagccaaagcgccacctggtgcttggactgcagccaagaggaagcagtccaa 58
|||||||| |||||||||||||| | ||||||| ||||||||||||||||||| ||||
Sbjct: 3 gtgcccaaaccaaagcgccacctagcgcttggattgcagccaagaggaagcagcccaa 60
>53643_ptc-miRf11821-akr:pmrd
Length = 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 6 caagccaaagcgccacctggtgcttggactgcagccaagaggaagcagtccaagcgcc 63
|||||||||||| ||| ||| |||||||||||||| | |||||||| |||||||||
Sbjct: 1 caagccaaagcgtcacttggcgcttggactgcagcgcaaaggaagcatgccaagcgcc 58
>54243_ptc-miRf12421-akr:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 18 ccacctggtgcttggactgcagccaagaggaagcagtccaagcgcc 63
|||| ||| |||||| || || |||||||||||||| |||||||||
Sbjct: 112 ccacgtggcgcttgggctacacccaagaggaagcagaccaagcgcc 67
>53655_ptc-miRf11833-akr:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 28 cttggactgcagccaagaggaagcagtccaag 59
||||| ||||| |||||||||||||| |||||
Sbjct: 101 cttgggctgcacccaagaggaagcagaccaag 70
>52067_ptc-miRf10245-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 5 ccaagccaaagcgccacctggtgcttggactgcagc 40
|||||||||||| ||| ||||||||||| ||||||
Sbjct: 55 ccaagccaaagcaacacgtggtgcttggattgcagc 90
>52066_ptc-miRf10244-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 5 ccaagccaaagcgccacctggtgcttggactgcagc 40
|||||||||||| ||| ||||||||||| ||||||
Sbjct: 55 ccaagccaaagcaacacgtggtgcttggattgcagc 90
>51836_ptc-miRf10014-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 18 ccacctggtgcttggactgcagccaagaggaagcag 53
|||| ||| |||||| ||||| ||||||||||||||
Sbjct: 14 ccacgtggcgcttgggctgcacccaagaggaagcag 49
