miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 61.9 bits (31), Expect = 7e-11
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 1 gttggacctggatgcgtccgcgcccaaccatgcgttgggtgtggactcaaccgcgtcca 59
|||||||||||| |||||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 72 gttggacctggacgcgtccgcgcccaaccccacgttgggtctggacgcaaccacgtcca 14
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 64 catgttgggcctggacgcgttcgcgcccaac 94
|||||||| ||||||||||| ||||||||||
Sbjct: 75 catgttggacctggacgcgtccgcgcccaac 45
>52859_ptc-miRf11037-akr:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 34 gttgggtgtggactcaaccgcgtccaccttcatgttgggcctggacgcgttcgcgcccaa 93
||||||| ||||| | ||||||||||||| |||||||| || ||||| || | |||||||
Sbjct: 24 gttgggtctggacgcgaccgcgtccacctccatgttggaccgggacgtgtcctcgcccaa 83
Query: 94 c 94
|
Sbjct: 84 c 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 catgttgggcctggacgcgt 83
||||||||||||||||||||
Sbjct: 87 catgttgggcctggacgcgt 106
>53932_ptc-miRf12110-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 28 gttggacctggatgcgtccacgcccaac 1
>53931_ptc-miRf12109-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 28 gttggacctggatgcgtccacgcccaac 1
>53930_ptc-miRf12108-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 28 gttggacctggatgcgtccacgcccaac 1
>53929_ptc-miRf12107-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 28 gttggacctggatgcgtccacgcccaac 1
>52019_ptc-miRf10197-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 55 gttggacctggatgcgtccacgcccaac 82
>52018_ptc-miRf10196-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 55 gttggacctggatgcgtccacgcccaac 82
>52017_ptc-miRf10195-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 55 gttggacctggatgcgtccacgcccaac 82
>52016_ptc-miRf10194-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gttggacctggatgcgtccgcgcccaac 28
||||||||||||||||||| ||||||||
Sbjct: 55 gttggacctggatgcgtccacgcccaac 82
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 35 ttgggtgtggactcaaccgcgtccaccttcatgttgggcctggacgcgttcgcgcccaa 93
|||||| ||||| | || ||||||| || ||||||||||||||||||| | |||||||
Sbjct: 68 ttgggtttggacgcgactgcgtccaactctatgttgggcctggacgcgtccacgcccaa 10
>52009_ptc-miRf10187-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 gttggacctggatgcgtccgcgcccaaccatgcgt 35
|||||||||||| |||||| ||||||||| |||||
Sbjct: 38 gttggacctggacgcgtccacgcccaaccctgcgt 4
>53319_ptc-miRf11497-akr:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 50 accgcgtccaccttcatgttgggcctgga 78
||||||||||||| |||||||| ||||||
Sbjct: 85 accgcgtccacctccatgttggacctgga 113
>52537_ptc-miRf10715-akr:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 50 accgcgtccaccttcatgttgggcctgga 78
||||||||||||| |||||||| ||||||
Sbjct: 50 accgcgtccacctccatgttggacctgga 22
>52536_ptc-miRf10714-akr:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 50 accgcgtccaccttcatgttgggcctgga 78
||||||||||||| |||||||| ||||||
Sbjct: 57 accgcgtccacctccatgttggacctgga 29
>53953_ptc-miRf12131-akr:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 67 gttgggcctggacgcgttcgcgcccaac 94
||||||||||||||||| | ||||||||
Sbjct: 41 gttgggcctggacgcgtccacgcccaac 14
