miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53948_ptc-miRf12126-akr:pmrd
Length = 158
Score = 73.8 bits (37), Expect = 1e-14
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 5 gacaaaaaccggttcaaaccggtttggctcggttttt 41
|||||||||||||||||||||||||||||||||||||
Sbjct: 123 gacaaaaaccggttcaaaccggtttggctcggttttt 87
>53431_ptc-miRf11609-akr:pmrd
Length = 60
Score = 73.8 bits (37), Expect = 1e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 5 gacaaaaaccggttcaaaccggtttggctcggttttt 41
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacaaaaaccggttcaaaccggtttggctcggttttt 37
>52446_ptc-miRf10624-akr:pmrd
Length = 158
Score = 73.8 bits (37), Expect = 1e-14
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 5 gacaaaaaccggttcaaaccggtttggctcggttttt 41
|||||||||||||||||||||||||||||||||||||
Sbjct: 123 gacaaaaaccggttcaaaccggtttggctcggttttt 87
>51868_ptc-miRf10046-akr:pmrd
Length = 97
Score = 71.9 bits (36), Expect = 5e-14
Identities = 46/48 (95%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 3 aggacaaaaaccggttcaaaccggtttggctcggt-ttttccggtttg 49
||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 53 aggacaaaaaccggttcaaacaggtttggctcggttttttccggtttg 6
>52625_ptc-miRf10803-akr:pmrd
Length = 108
Score = 67.9 bits (34), Expect = 8e-13
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 3 aggacaaaaaccggttcaaaccggtttggctcggtttttccggttt 48
|||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 47 aggataaaaaccagttcaaaccggtttggctcggttttttcggttt 2
>53654_ptc-miRf11832-akr:pmrd
Length = 123
Score = 65.9 bits (33), Expect = 3e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 aggacaaaaaccggttcaaaccggtttggctcggttt 39
||||||||||||||||||||| |||||||||||||||
Sbjct: 45 aggacaaaaaccggttcaaactggtttggctcggttt 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 24 cggtttggctcggtttttccggtttgactcgg 55
|||||||||||| ||||| ||||||| |||||
Sbjct: 76 cggtttggctcgattttttcggtttggctcgg 107
>51851_ptc-miRf10029-akr:pmrd
Length = 79
Score = 65.9 bits (33), Expect = 3e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 3 aggacaaaaaccggttcaaaccggtttggctcggttt 39
||||||||||||||||||||| |||||||||||||||
Sbjct: 37 aggacaaaaaccggttcaaactggtttggctcggttt 1
>53928_ptc-miRf12106-akr:pmrd
Length = 137
Score = 61.9 bits (31), Expect = 5e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 7 caaaaaccggttcaaaccggtttggctcggttttt 41
|||||||||||||||||||||||| ||||||||||
Sbjct: 37 caaaaaccggttcaaaccggtttgactcggttttt 71
>52373_ptc-miRf10551-akr:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 5e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 aaaaaccggttcaaaccggtttggctcggtt 38
|||||||||||||||||||||||||||||||
Sbjct: 78 aaaaaccggttcaaaccggtttggctcggtt 108
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 aaccggttcaaaccggtttggctcggtttt 40
|||||| |||||||||||||||||||||||
Sbjct: 1 aaccgggtcaaaccggtttggctcggtttt 30
>52274_ptc-miRf10452-akr:pmrd
Length = 147
Score = 61.9 bits (31), Expect = 5e-11
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 3 aggacaaaaaccggttcaaaccggtttggctcggttttt 41
||||||||||| |||||||||| ||||||||||||||||
Sbjct: 88 aggacaaaaacaggttcaaacctgtttggctcggttttt 50
>53823_ptc-miRf12001-akr:pmrd
Length = 124
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 7 caaaaaccggttcaaaccggtttggctcggtttt 40
||||||||| ||||||||||||||||||||||||
Sbjct: 71 caaaaaccgattcaaaccggtttggctcggtttt 104
>53451_ptc-miRf11629-akr:pmrd
Length = 67
Score = 60.0 bits (30), Expect = 2e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 8 aaaaaccggttcaaaccgg-tttggctcggtttttccggttt 48
||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 7 aaaaaccggttcaaaccggttttggcttggtttttccggttt 48
>51831_ptc-miRf10009-akr:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 8e-10
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 9 aaaaccggttcaaaccggtttggctcggttttt 41
||||| |||||||||||||||||||||||||||
Sbjct: 37 aaaacaggttcaaaccggtttggctcggttttt 5
>54327_ptc-miRf12505-akr:pmrd
Length = 143
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 3 aggacaaaaaccggttcaaaccggttt 29
|||||||||||||||||||||||||||
Sbjct: 34 aggacaaaaaccggttcaaaccggttt 8
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 23 ccggtttggctcggtttttccggtttgactcgg 55
||||||||||||||||||| ||||||| |||||
Sbjct: 44 ccggtttggctcggttttttcggtttggctcgg 76
Score = 42.1 bits (21), Expect = 5e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 24 cggtttggctcgg-tttttccggtttgactcgg 55
||||||||||||| ||||||||||||| |||||
Sbjct: 25 cggtttggctcggttttttccggtttggctcgg 57
>52886_ptc-miRf11064-akr:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 3 aggacaaaaaccggttcaaaccggtttggctcggttt 39
||||||||||||||||||| | ||||||||| |||||
Sbjct: 39 aggacaaaaaccggttcaagctggtttggcttggttt 75
>51988_ptc-miRf10166-akr:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 7e-07
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 10 aaaccggttcaaaccggtttggctcggttttt 41
||||||||||||||||||||| || |||||||
Sbjct: 114 aaaccggttcaaaccggtttgacttggttttt 83
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 aaaaaccggttcaaaccggtttggctcggttttt 41
||||||| |||||||| ||||||||||| |||||
Sbjct: 58 aaaaaccagttcaaactggtttggctcgtttttt 91
