miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00694;mir-137;AADN02012896.1/32588-32489 9031:Gallus gallus
           (chicken)
          Length = 100

 Score =  182 bits (92), Expect = 7e-46
 Identities = 95/96 (98%)
 Strand = Plus / Plus

                                                                       
Query: 14  tctgactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgc 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   tctgactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgc 64

                                               
Query: 74  ttaagaatacgcgtagtcgaggagagtaccagcggc 109
           |||||||||||||||||||||||||||||| |||||
Sbjct: 65  ttaagaatacgcgtagtcgaggagagtaccggcggc 100




>RF00694;mir-137;ABRO01064648.1/7203-7302 10020:Dipodomys ordii
           (Ord's kangaroo rat)
          Length = 100

 Score =  153 bits (77), Expect = 6e-37
 Identities = 89/93 (95%)
 Strand = Plus / Plus

                                                                       
Query: 17  gactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgctta 76
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8   gactctattcggtgacgggtattcttgggtggataatacggattacgttgttatagctta 67

                                            
Query: 77  agaatacgcgtagtcgaggagagtaccagcggc 109
           |||||||| ||||||||||||||| ||||||||
Sbjct: 68  agaatacgtgtagtcgaggagagtgccagcggc 100




>RF00694;mir-137;BAAE01237923.1/971-872 8090:Oryzias latipes
           (Japanese medaka)
          Length = 100

 Score =  151 bits (76), Expect = 2e-36
 Identities = 82/84 (97%)
 Strand = Plus / Plus

                                                                       
Query: 17  gactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgctta 76
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8   gactctcttcggtgacgggtattcttgggtggataatacggatcacgttgttattgctta 67

                                   
Query: 77  agaatacgcgtagtcgaggagagt 100
           |||||||||||||| |||||||||
Sbjct: 68  agaatacgcgtagttgaggagagt 91




>RF00694;mir-137;AL929343.7/129004-128905 7955:Danio rerio
           (zebrafish)
          Length = 100

 Score =  143 bits (72), Expect = 6e-34
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                       
Query: 17  gactctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgctta 76
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 8   gactctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgctta 67

                                   
Query: 77  agaatacgcgtagtcgaggagagt 100
           ||||||||||||||||||||||||
Sbjct: 68  agaatacgcgtagtcgaggagagt 91




>RF00694;mir-137;CAAK05033301.1/18518-18419 7955:Danio rerio
           (zebrafish)
          Length = 100

 Score =  131 bits (66), Expect = 2e-30
 Identities = 78/82 (95%)
 Strand = Plus / Plus

                                                                       
Query: 19  ctctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgcttaag 78
           ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||
Sbjct: 10  ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69

                                 
Query: 79  aatacgcgtagtcgaggagagt 100
           |||||||||||| |||||||||
Sbjct: 70  aatacgcgtagttgaggagagt 91




>RF00694;mir-137;AJ324266.1/117-18 9606:Homo sapiens (human)
          Length = 100

 Score =  105 bits (53), Expect = 1e-22
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                       
Query: 10  gtcctctgactctcttcggtgacgggtattcttgggtggataatacggattacgttgtta 69
           |||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1   gtcctctgactctagtcggtgacgggtattcttgggtggataatccggatgacgttgtta 60

                                            
Query: 70  ttgcttaagaatacgcgtagtcgaggagagtac 102
           | | ||||||||||| ||| || |||| |||||
Sbjct: 61  tggtttaagaatacgtgtattcaaggaaagtac 93




>RF00694;mir-137;AAPN01296459.1/4449-4348 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 102

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                      
Query: 24 ttcggtgacgggtattcttgggtggataatacggattacgttgttattgcttaagaatac 83
          |||| ||||||||||||||||||  |||||||||||  || ||||||||||| |||||||
Sbjct: 15 ttcgatgacgggtattcttgggtacataatacggatggcgctgttattgcttgagaatac 74

                      
Query: 84 gcgtagtcgagg 95
          ||||||||||||
Sbjct: 75 gcgtagtcgagg 86




>RF00694;mir-137;ABVD01008873.1/1869-1971 9358:Choloepus hoffmanni
          (Hoffmann's two-fingered sloth)
          Length = 103

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                              
Query: 11 tcctctgactctcttcggtgacgggtattcttgggtggataatacggattac 62
          |||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 2  tcctctgactctcttcagtgacggatattcttgggtggataatacggattac 53




>RF00694;mir-137;AAWZ01010620.1/48359-48459 28377:Anolis
          carolinensis (green anole)
          Length = 101

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                      
Query: 31 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 90
          ||||||||||||||||  ||||||| |||  |||||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggtatataatacagatggcgttgttattgcttgagaatacgcgtagt 81

               
Query: 91 cgagg 95
           ||||
Sbjct: 82 tgagg 86




>RF00694;mir-137;CAAE01013623.1/560-657 99883:Tetraodon
          nigroviridis
          Length = 98

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                      
Query: 31 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 90
          |||||||||||||||| |||||||| |||   | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 81

              
Query: 91 cgag 94
          ||||
Sbjct: 82 cgag 85




>RF00694;mir-137;ABPK01025702.1/584-484 57307:Labeotropheus
          fuelleborni
          Length = 101

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                      
Query: 31 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 90
          |||||||||||||||| |||||||| |||   | ||||||||||| ||||||||||||||
Sbjct: 23 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 82

              
Query: 91 cgag 94
          ||||
Sbjct: 83 cgag 86




>RF00694;mir-137;BAAF04031315.1/5933-5836 8090:Oryzias latipes
          (Japanese medaka)
          Length = 98

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                      
Query: 31 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtagt 90
          |||||||||||||||| |||||||| |||   | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatatggatgttattgcttgagaatacgcgtagt 81

              
Query: 91 cgag 94
          ||||
Sbjct: 82 cgag 85




>RF00694;mir-137;AAFR03049204.1/9121-9021 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 101

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                      
Query: 29 tgacgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgta 88
          |||||||||||||||||| ||||||||  ||  || ||||||||||| ||||||| ||||
Sbjct: 20 tgacgggtattcttgggtagataataccaatggcgctgttattgcttgagaatacacgta 79

                 
Query: 89 gtcgagg 95
          |||||||
Sbjct: 80 gtcgagg 86




>RF00694;mir-137;BAAF04063265.1/5995-5897 8090:Oryzias latipes
          (Japanese medaka)
          Length = 99

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                     
Query: 31 acgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtag 89
          |||||||||||||||| |||||||| |||  || ||||||||||| |||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtcgatgttattgcttgagaatacgcgtag 80