miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33287_bta-mir-210:mirbase
Length = 98
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 6 cctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgc 60
Query: 66 gtgtgacagcggctgatctgtccctgggcagcgc 99
||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtgacagcggctgatctgtccctgggcagcgc 94
>26770_cfa-mir-210:mirbase
Length = 98
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 6 cctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgc 65
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
Query: 66 gtgtgacagcggctgatctgtccctgggcagcgc 99
||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtgacagcggctgatctgtccctgggcagcgc 94
>31937_mmu-mir-210:mirbase
Length = 110
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 3 gtccctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactg 62
|||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9 gtccctccaggctcaggacagccactgcccaccgcacactgcgttgctccggacccactg 68
Query: 63 tgcgtgtgacagcggctgatctgtccctgggcagcgc 99
|||||||||||||||||||||||||||||||||||||
Sbjct: 69 tgcgtgtgacagcggctgatctgtccctgggcagcgc 105
>27806_mml-mir-210:mirbase
Length = 110
Score = 161 bits (81), Expect = 1e-40
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 3 gtccctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactg 62
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 9 gtccctccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactg 68
Query: 63 tgcgtgtgacagcggctgatctgtccctgggcagcgc 99
|||||||||||||||||||||||| ||||||||||||
Sbjct: 69 tgcgtgtgacagcggctgatctgtgcctgggcagcgc 105
>30287_ptr-mir-210:mirbase
Length = 109
Score = 161 bits (81), Expect = 1e-40
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 3 gtccctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactg 62
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 9 gtccctccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactg 68
Query: 63 tgcgtgtgacagcggctgatctgtccctgggcagcgc 99
|||||||||||||||||||||||| ||||||||||||
Sbjct: 69 tgcgtgtgacagcggctgatctgtgcctgggcagcgc 105
>32801_rno-mir-210:mirbase
Length = 110
Score = 161 bits (81), Expect = 1e-40
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 3 gtccctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactg 62
|||||||||||| |||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 9 gtccctccaggctcaggacagccactgcccacagcacactgcgttgctccggacccactg 68
Query: 63 tgcgtgtgacagcggctgatctgtccctgggcagcgc 99
|||||||||||||||||||||||||||||||||||||
Sbjct: 69 tgcgtgtgacagcggctgatctgtccctgggcagcgc 105
>33068_rno-mir-3574:mirbase
Length = 118
Score = 161 bits (81), Expect = 1e-40
Identities = 93/97 (95%)
Strand = Plus / Minus
Query: 3 gtccctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactg 62
|||||||||||| |||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 108 gtccctccaggctcaggacagccactgcccacagcacactgcgttgctccggacccactg 49
Query: 63 tgcgtgtgacagcggctgatctgtccctgggcagcgc 99
|||||||||||||||||||||||||||||||||||||
Sbjct: 48 tgcgtgtgacagcggctgatctgtccctgggcagcgc 12
>28528_hsa-mir-210:mirbase
Length = 110
Score = 155 bits (78), Expect = 7e-39
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 6 cctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgc 65
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 12 cctccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactgtgc 71
Query: 66 gtgtgacagcggctgatctgtccctgggcagcgc 99
||||||||||||||||||||| ||||||||||||
Sbjct: 72 gtgtgacagcggctgatctgtgcctgggcagcgc 105
>34038_ssc-mir-210:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 13 gcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgcgtgtgac 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgcgtgtgac 60
Query: 73 agcggctgatctgtcc 88
||||||||||||||||
Sbjct: 61 agcggctgatctgtcc 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 gctccggacccactgtgcgtgtgacagcggct 79
|||| |||||||||||||||||||||||||||
Sbjct: 37 gctcaggacccactgtgcgtgtgacagcggct 68
>30905_ppy-mir-210:mirbase
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 90/102 (88%), Gaps = 8/102 (7%)
Strand = Plus / Plus
Query: 6 cctccaggcgcagggc-agccactgccc-accgcacactgcgctgctcc--ggacc-cac 60
|||||||||||||||| |||| |||||| ||||||||||||||||| || |||| |||
Sbjct: 14 cctccaggcgcagggccagcccctgccccaccgcacactgcgctgcccccaagaccacac 73
Query: 61 -tgtg-cgtgtgacagcggctgatctgtccctg-ggcagcgc 99
|||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 74 gtgtgccgtgtgacagcggctgatctgtgcctgaggcagcgc 115
>24695_bfl-mir-210:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctgtgcgtgtgacagcggctgat 82
|||||||||||||||||||||||
Sbjct: 61 ctgtgcgtgtgacagcggctgat 83
>25831_xtr-mir-210:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ccactgtgcgtgtgacagcggct 79
|||||||||||||||||||||||
Sbjct: 53 ccactgtgcgtgtgacagcggct 75
>34366_dre-mir-210:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ccactgtgcgtgtgacagcggct 79
|||||||||||||||||||||||
Sbjct: 45 ccactgtgcgtgtgacagcggct 67
>34634_fru-mir-210:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ccactgtgcgtgtgacagcggct 79
|||||||||||||||||||||||
Sbjct: 52 ccactgtgcgtgtgacagcggct 74
>34782_tni-mir-210:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ccactgtgcgtgtgacagcggct 79
|||||||||||||||||||||||
Sbjct: 44 ccactgtgcgtgtgacagcggct 66
>25526_pma-mir-210:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tgtgcgtgtgacagcggctg 80
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggctg 68
