miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 61.9 bits (31), Expect = 1e-10
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 56 aggtccaacatggcgttggacgtggtcgcgtctagacccaatgtggggttgtgcgtgcac 115
|||| |||||||| ||||| || || ||||||||||||||| |||||||| ||||| ||
Sbjct: 86 aggtacaacatggggttggtcggggacgcgtctagacccaacatggggttgggcgtggac 145
Query: 116 gtgtcca 122
|||||||
Sbjct: 146 gtgtcca 152
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 55 caggtccaacatggcgttggacgtggtcgcgtctagacccaatgtggggttgtgcgtg 112
|||||| ||| ||| ||||| | | ||||||| |||||| |||||||||||| |||||
Sbjct: 19 caggtctaacgtggggttgggcattgtcgcgtttagacctaatgtggggttgggcgtg 76
>52859_ptc-miRf11037-akr:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 1 tggagttggacgcggtcatgtccagacccaacatggggttaagcggggatgcgtc 55
||||| ||||||||||| |||||||||||||||||| || ||||||| |||||
Sbjct: 55 tggaggtggacgcggtcgcgtccagacccaacatgggattgggcggggacgcgtc 1
Score = 52.0 bits (26), Expect = 1e-07
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 20 gtccagacccaacatggggttaagcggggatgcgtca-ggtccaacatggcgttggacgt 78
|||||| |||||||||||||| ||| ||| |||| |||||||||||| | ||||||
Sbjct: 102 gtccaggcccaacatggggttgggcgaggacacgtcccggtccaacatggaggtggacgc 43
Query: 79 ggtcgcgtctagacccaa 96
||||||||| ||||||||
Sbjct: 42 ggtcgcgtccagacccaa 25
>52751_ptc-miRf10929-akr:pmrd
Length = 119
Score = 54.0 bits (27), Expect = 3e-08
Identities = 94/115 (81%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 9 gacgcggtcatgtccagacccaacatggggttaagcggggatgcgtc-aggtccaacatg 67
|||||||||| |||||||| ||| ||||||| ||| || ||||| ||||||||||||
Sbjct: 119 gacgcggtcacgtccagactcaatgtggggttgggcgtagaggcgtctaggtccaacatg 60
Query: 68 gcgttggacgtggtcgcgtctagacccaatgtggggttgtgcgtgcacgtgtcca 122
| | ||||| ||||||||||||||||| | |||||| ||| | |||||||||
Sbjct: 59 gtggtggacacagtcgcgtctagacccaacatagggttgggcgaggacgtgtcca 5
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 70 gttggacgtggtcgcgtctagacccaatgtggggttg 106
|||||||||||| ||||| |||||||| |||||||||
Sbjct: 12 gttggacgtggttgcgtccagacccaacgtggggttg 48
Score = 44.1 bits (22), Expect = 2e-05
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gagttggacgcggtcatgtccagacccaacatggggttaagcggggatgcgt-caggtcc 61
|||||||||| ||| ||||||||||||| ||||||| ||| ||| |||| |||||||
Sbjct: 10 gagttggacgtggttgcgtccagacccaacgtggggttgggcgcggacgcgtccaggtcc 69
Query: 62 aacatg 67
||||||
Sbjct: 70 aacatg 75
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 55 caggtccaacatggcgttggacgtggtcgcgtctagacccaatgtggggttg 106
|||| ||||||| | |||||||| |||||||| | ||||||||||||||||
Sbjct: 27 caggcccaacatagagttggacgcagtcgcgtccaaacccaatgtggggttg 78
>52500_ptc-miRf10678-akr:pmrd
Length = 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 55 caggtccaacatggcgttggacgtggtcgcgtctagaccc 94
||||| ||||||||||||||||| || |||||| ||||||
Sbjct: 19 caggttcaacatggcgttggacgcgggcgcgtccagaccc 58
>52428_ptc-miRf10606-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 55 caggtccaacatggcgttggacgtggtcgcgtctagacccaatgtggggttgtgcgtg 112
|||||| ||| ||| ||||| | | ||||||| |||||| |||||||||||| |||||
Sbjct: 19 caggtctaacgtggggttgggcattgtcgcgtttagacctaatgtggggttgggcgtg 76
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 55 caggtccaacatggcgttggacgtggtcgcgtctagacccaatgtggggttgtgcgtg 112
|||||| ||| ||| ||||| | | ||||||| |||||| |||||||||||| |||||
Sbjct: 30 caggtctaacgtggggttgggcattgtcgcgtttagacctaatgtggggttgggcgtg 87
>53433_ptc-miRf11611-akr:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 45/52 (86%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 21 tccagacccaacatggggttaagcggggatgcgt-caggtccaacatggcgt 71
|||||||||||| ||||||| ||| ||| |||| ||||||||||||||||
Sbjct: 13 tccagacccaacgtggggttgggcgtggacgcgtataggtccaacatggcgt 64
>52771_ptc-miRf10949-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1 tggagttggacgcggtcatgtccagacccaacatggggtt 40
||||||| || |||||| ||||||| |||||||||||||
Sbjct: 34 tggagttagatgcggtcgcgtccagatccaacatggggtt 73
>52279_ptc-miRf10457-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 22 ccagacccaacatggggttaagcggggatgcgtc-aggtccaacatgg 68
||||||| ||||||||||| |||| | |||| || |||||||||||||
Sbjct: 94 ccagacctaacatggggttgagcgtgaatgcatctaggtccaacatgg 47
>52009_ptc-miRf10187-akr:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 60 ccaacatggcgttggacgtggtcgcgtc 87
||||||||| ||||| ||||||||||||
Sbjct: 66 ccaacatggggttggtcgtggtcgcgtc 93
