miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54261_ptc-miRf12439-akr:pmrd
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 11 tcggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaaccg 68
||||||| ||||||||||||| ||||||| ||||| ||||||||||| || |||||||
Sbjct: 17 tcggttcggttcggttttttcggtttcaggcttatcaaaccgaaaccaaaccgaaccg 74
>51988_ptc-miRf10166-akr:pmrd
Length = 154
Score = 63.9 bits (32), Expect = 2e-11
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 13 ggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaa 60
||||| ||||||||||| ||||||||| |||| |||||||||||||||
Sbjct: 64 ggttcggttcggtttttccagtttcaggcttaaaaaaccgaaaccgaa 17
>53948_ptc-miRf12126-akr:pmrd
Length = 158
Score = 61.9 bits (31), Expect = 6e-11
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 14 gttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaaccg 68
|||| ||| ||||||||| ||||||| ||||||||||| |||||||| |||||||
Sbjct: 63 gttcggtttggttttttcggtttcaggcttataaaaccaaaaccgaaccgaaccg 9
>52446_ptc-miRf10624-akr:pmrd
Length = 158
Score = 61.9 bits (31), Expect = 6e-11
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 14 gttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaaccg 68
|||| ||| ||||||||| ||||||| ||||||||||| |||||||| |||||||
Sbjct: 63 gttcggtttggttttttcggtttcaggcttataaaaccaaaaccgaaccgaaccg 9
>54026_ptc-miRf12204-akr:pmrd
Length = 90
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 tcggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaaccg 68
||||||| ||||||||||||| ||||||| ||||| ||| ||||||||| |||||||
Sbjct: 17 tcggttcggttcggttttttcggtttcaggcttatcaaattgaaaccgaaccgaaccg 74
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 tcggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaaccg 68
||||||| ||||||||||| | ||| ||| |||| ||||||||||||||| |||||||
Sbjct: 83 tcggttcggttcggtttttccggttccaggcttaaaaaaccgaaaccgaaccgaaccg 140
>53912_ptc-miRf12090-akr:pmrd
Length = 90
Score = 58.0 bits (29), Expect = 9e-10
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 11 tcggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaacc 67
||||||| ||||||||||||| |||||| |||| |||||||||||||| ||||||
Sbjct: 17 tcggttcggttcggttttttcggtttcaagtttatcaaaccgaaaccgaaccgaacc 73
>52886_ptc-miRf11064-akr:pmrd
Length = 144
Score = 56.0 bits (28), Expect = 4e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 13 ggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaaccg 68
||||| ||| ||||||||| |||| || ||||||||||||||| |||| |||||||
Sbjct: 77 ggttcggtttggttttttcggttttaggcttataaaaccgaaatcgaaccgaaccg 132
>53910_ptc-miRf12088-akr:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 11 tcggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaaccg 68
||||||| ||||||||||||| |||| || ||||| ||||||||| ||| |||||||
Sbjct: 17 tcggttcggttcggttttttcggttttaggcttatcaaaccgaaattgaaccgaaccg 74
>52864_ptc-miRf11042-akr:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 12 cggttcagttcggttttttcagtttcagtcttataaaaccgaaaccgaatcgaa 65
|||||| ||||| ||||||||||||||| ||||| |||| |||||||| ||||
Sbjct: 18 cggttcggttcgattttttcagtttcaggcttatcgaaccaaaaccgaaccgaa 71
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 tcggttcagttcggtttttt 30
||||||||||||||||||||
Sbjct: 22 tcggttcagttcggtttttt 3
