miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52405_ptc-miRf10583-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 3 ccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaacg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaacg 53
Query: 63 tcaggcccaagaaccttgggtttggctgcaacaacaaacccaagagcgttgg 114
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 tcaggcccaagaaccttgggtttggctgcaacaacaaacccaagagcgttgg 1
>53890_ptc-miRf12068-akr:pmrd
Length = 105
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1 atccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 atccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaa 35
Query: 61 cgtcaggcccaagaaccttgggtttggctgcaac 94
||||||||||||||||||||||||||||||||||
Sbjct: 34 cgtcaggcccaagaaccttgggtttggctgcaac 1
>52404_ptc-miRf10582-akr:pmrd
Length = 105
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1 atccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 atccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaa 35
Query: 61 cgtcaggcccaagaaccttgggtttggctgcaac 94
||||||||||||||||||||||||||||||||||
Sbjct: 34 cgtcaggcccaagaaccttgggtttggctgcaac 1
>54319_ptc-miRf12497-akr:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 cccaagaaccttgggtttggctgcaac 94
|||||||| ||||||||||||||||||
Sbjct: 12 cccaagaatcttgggtttggctgcaac 38
>52755_ptc-miRf10933-akr:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 6e-06
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 3 ccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaac 61
|||| |||||||||||||| |||||| | |||| |||| ||||| |||||| ||||||
Sbjct: 60 ccaacgctcttgggcttggtgttgcaacaagacctaagaacgttgggtgtggctgaaac 2
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 89 tgcaacaacaaacccaagagcgttgggt 116
||||||| ||| ||||||||||||||||
Sbjct: 35 tgcaacaccaagcccaagagcgttgggt 62
>52651_ptc-miRf10829-akr:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 cccaagaaccttgggtttggctgcaac 94
|||||||| ||||||||||||||||||
Sbjct: 5 cccaagaatcttgggtttggctgcaac 31
>52288_ptc-miRf10466-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 3 ccaaggctcttgggcttggagttgcagccagactaaagagcgttgagtgtggttgaaac 61
|||| |||||||||||||| |||||| | |||| |||| ||||| |||||| ||||||
Sbjct: 28 ccaacgctcttgggcttggtgttgcaacaagacctaagaacgttgggtgtggctgaaac 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 ttgggcttggagttgcagccagac 35
||||| ||||||||||||||||||
Sbjct: 4 ttgggtttggagttgcagccagac 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 89 tgcaacaacaaacccaagagcgttgggt 116
||||||| ||| ||||||||||||||||
Sbjct: 53 tgcaacaccaagcccaagagcgttgggt 26
>52538_ptc-miRf10716-akr:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ccaagaaccttgggtttggctgcaac 94
||||||| ||||||||||||||||||
Sbjct: 7 ccaagaatcttgggtttggctgcaac 32
>52129_ptc-miRf10307-akr:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ccaagaaccttgggtttggctgcaac 94
||||||| ||||||||||||||||||
Sbjct: 7 ccaagaatcttgggtttggctgcaac 32
>53761_ptc-miRf11939-akr:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 cccaagaaccttgggtttggc 88
|||||||||||||||||||||
Sbjct: 12 cccaagaaccttgggtttggc 32
>52461_ptc-miRf10639-akr:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 3 ccaaggctcttgggcttggagttgcagccagac 35
|||||||| ||||||| |||||||||||||||
Sbjct: 77 ccaaggctgttgggctcagagttgcagccagac 109
>53969_ptc-miRf12147-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 3 ccaaggctcttgggcttggagttgcagccagactaaagagcgtt 46
|||| |||||||||||||| ||| |||||||| |||||||||
Sbjct: 12 ccaacgctcttgggcttggcattgtagccagacccaagagcgtt 55
