miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53774_ptc-miRf11952-akr:pmrd
Length = 80
Score = 69.9 bits (35), Expect = 3e-13
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 6 atcagtgttttactgtggactgcactgtgcattctaaaataaaacactgat 56
||||||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct: 78 atcagtgttttactgtggactgcactgtgcagtccacagtaaaacactgat 28
Score = 61.9 bits (31), Expect = 8e-11
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 6 atcagtgttttactgtggactgcactgtgcattctaaaataaaacactgat 56
||||||||||||||||||||||||| ||||| || | | ||||||||||||
Sbjct: 28 atcagtgttttactgtggactgcacagtgcagtccacagtaaaacactgat 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 atcagtgttttactgtggactgcac 30
|||||||||||||||||||||||||
Sbjct: 3 atcagtgttttactgtggactgcac 27
>52897_ptc-miRf11075-akr:pmrd
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 6 atcagtgttttactgtggactgcactgtgcattctaaaataaaacactgat 56
||||||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct: 6 atcagtgttttactgtggactgcactgtgcagtccacagtaaaacactgat 56
Score = 61.9 bits (31), Expect = 8e-11
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 6 atcagtgttttactgtggactgcactgtgcattctaaaataaaacactgat 56
||||||||||||||||||||||||| ||||| || | | ||||||||||||
Sbjct: 56 atcagtgttttactgtggactgcacagtgcagtccacagtaaaacactgat 6
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 atcagtgttttactgtggactgcac 30
|||||||||||||||||||||||||
Sbjct: 81 atcagtgttttactgtggactgcac 57
>52739_ptc-miRf10917-akr:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 6 atcagtgttttactgtggactgcactgtgcattctaaaataaaacactgattccttttag 65
|||||||||||| ||||||||||| ||||| || | |||||||||||||| ||||||
Sbjct: 8 atcagtgttttagtgtggactgcattgtgctgtccacggtaaaacactgattcgttttag 67
Score = 42.1 bits (21), Expect = 8e-05
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 4 gaatcagtgttttactgtggactgcactgtgcattctaaaataaaacactgat 56
||||||||||||||| |||||| |||| |||| || | | ||||||||||||
Sbjct: 60 gaatcagtgttttaccgtggacagcacaatgcagtccacactaaaacactgat 8
>54106_ptc-miRf12284-akr:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttttactgtggactgcactgtgca 36
|||||||||||||||||| |||||
Sbjct: 77 ttttactgtggactgcacagtgca 100
>54105_ptc-miRf12283-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttttactgtggactgcactgtgca 36
|||||||||||||||||| |||||
Sbjct: 69 ttttactgtggactgcacagtgca 92
>52535_ptc-miRf10713-akr:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 ttttactgtggactgcactgtgca 36
|||||||||||||||||| |||||
Sbjct: 77 ttttactgtggactgcacagtgca 100
