miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53075_ptc-miRf11253-akr:pmrd
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 tcggcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattca 60
Query: 61 ctgtgga 67
|||||||
Sbjct: 61 ctgtgga 67
>53058_ptc-miRf11236-akr:pmrd
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 9 gaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
|||||| |||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 12 gaacacttgattcgctga-aaatacacaattcggcagcgaacacctgattc 61
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tcggcagtgaacacctgattcgctgcg 27
||||||| |||||||||||||||||||
Sbjct: 41 tcggcagcgaacacctgattcgctgcg 67
>52026_ptc-miRf10204-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcggcagtgaacacctgattcgctgcg 27
|||||||||||||||||||||||||||
Sbjct: 77 tcggcagtgaacacctgattcgctgcg 103
Score = 48.1 bits (24), Expect = 7e-07
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
|||| ||||||||||||||||||| | |||||| ||| ||||||| ||||||||
Sbjct: 4 gcagcgaacacctgattcgctgcggacaacacaattcggcagcgaaaccctgattc 59
Score = 46.1 bits (23), Expect = 3e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1 tcggcagtgaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
||||||| ||| |||||||||||||| | |||||| ||| ||| |||||||||||||
Sbjct: 39 tcggcagcgaaaccctgattcgctgcggataacacaattcggcagtgaacacctgattc 97
>53938_ptc-miRf12116-akr:pmrd
Length = 71
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 tcgacagcgaacacctgattcactgtgga 67
||||||||||||||||||||| |||||||
Sbjct: 41 tcgacagcgaacacctgattcgctgtgga 69
>53083_ptc-miRf11261-akr:pmrd
Length = 68
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gcagtgaacacctgattcgctgcg 27
||||||||||||||||||||||||
Sbjct: 4 gcagtgaacacctgattcgctgcg 27
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gcagtgaacacctgattcgctgcg 27
||||||||||||||||||||||||
Sbjct: 43 gcagtgaacacctgattcgctgcg 66
>53082_ptc-miRf11260-akr:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gcagtgaacacctgattcgctgcg 27
||||||||||||||||||||||||
Sbjct: 25 gcagtgaacacctgattcgctgcg 48
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gcagtgaacacctgattcgctgcg 27
||||||||||||||||||||||||
Sbjct: 64 gcagtgaacacctgattcgctgcg 87
>52234_ptc-miRf10412-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3 ggcagtgaacacctgattcgctgc 26
||||||||||||||||||||||||
Sbjct: 27 ggcagtgaacacctgattcgctgc 4
>52311_ptc-miRf10489-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tcggcagtgaacacctgattcgctg 25
||||||| |||||||||||||||||
Sbjct: 80 tcggcagcgaacacctgattcgctg 104
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 cagcgaacacctgattcactgtgga 67
||||||||||||||||| |||||||
Sbjct: 84 cagcgaacacctgattcgctgtgga 108
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 tcggcagtgaacacctgattcgctgcg 27
||||||| |||||| ||||||||||||
Sbjct: 3 tcggcagcgaacacttgattcgctgcg 29
