miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53613_ptc-miRf11791-akr:pmrd
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 tttgccaagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgccaagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttgg 60
Query: 61 agggataactcaatacccacttggcaattagctgacatcttcaccagacctctcggcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agggataactcaatacccacttggcaattagctgacatcttcaccagacctctcggcaaa 120
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 85 caattagctgacatcttcaccagacctctcggcaaa 120
||||||||||||||||| ||||||||||| ||||||
Sbjct: 36 caattagctgacatctttaccagacctcttggcaaa 1
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 tttgccaagaggtctggtaaagatgtcagctaattg 36
|||||| ||||||||||| |||||||||||||||||
Sbjct: 120 tttgccgagaggtctggtgaagatgtcagctaattg 85
>53176_ptc-miRf11354-akr:pmrd
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 tttgccaagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgccaagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttgg 60
Query: 61 agggataactcaatacccacttggcaattagctgacatcttcaccagacctctcggcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agggataactcaatacccacttggcaattagctgacatcttcaccagacctctcggcaaa 120
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 85 caattagctgacatcttcaccagacctctcggcaaa 120
||||||||||||||||| ||||||||||| ||||||
Sbjct: 36 caattagctgacatctttaccagacctcttggcaaa 1
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 tttgccaagaggtctggtaaagatgtcagctaattg 36
|||||| ||||||||||| |||||||||||||||||
Sbjct: 120 tttgccgagaggtctggtgaagatgtcagctaattg 85
>54356_ptc-miRf12534-akr:pmrd
Length = 110
Score = 218 bits (110), Expect = 7e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 6 caagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggaggga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 caagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggaggga 51
Query: 66 taactcaatacccacttggcaattagctgacatcttcaccagacctctcg 115
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 taactcaatacccacttggcaattagctgacatcttcaccagacctctcg 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 3 agaggtctggtgaagatgtcagctaattg 31
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 80 caattagctgacatctttaccagacctct 108
>54010_ptc-miRf12188-akr:pmrd
Length = 110
Score = 218 bits (110), Expect = 7e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 6 caagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggaggga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 caagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggaggga 51
Query: 66 taactcaatacccacttggcaattagctgacatcttcaccagacctctcg 115
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 taactcaatacccacttggcaattagctgacatcttcaccagacctctcg 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 3 agaggtctggtgaagatgtcagctaattg 31
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 80 caattagctgacatctttaccagacctct 108
>54005_ptc-miRf12183-akr:pmrd
Length = 110
Score = 218 bits (110), Expect = 7e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 6 caagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggaggga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 caagaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggaggga 51
Query: 66 taactcaatacccacttggcaattagctgacatcttcaccagacctctcg 115
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 taactcaatacccacttggcaattagctgacatcttcaccagacctctcg 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 3 agaggtctggtgaagatgtcagctaattg 31
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 80 caattagctgacatctttaccagacctct 108
>54230_ptc-miRf12408-akr:pmrd
Length = 115
Score = 212 bits (107), Expect = 4e-56
Identities = 114/115 (99%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 4 gccaagaggtctggtaaagatgtcagctaattgagaagat-gatgaaacaaactttggag 62
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gccaagaggtctggtaaagatgtcagctaattgagaagattgatgaaacaaactttggag 60
Query: 63 ggataactcaatacccacttggcaattagctgacatcttcaccagacctctcggc 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggataactcaatacccacttggcaattagctgacatcttcaccagacctctcggc 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 33 caattagctgacatctttaccagacctct 5
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 111 agaggtctggtgaagatgtcagctaattg 83
>53614_ptc-miRf11792-akr:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 8 agaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggagggata 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggagggata 60
Query: 68 actcaatacccacttggcaattagctgacatcttcaccagacctct 113
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcaatacccacttggcaattagctgacatcttcaccagacctct 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 29 caattagctgacatctttaccagacctct 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 106 agaggtctggtgaagatgtcagctaattg 78
>53186_ptc-miRf11364-akr:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 8 agaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggagggata 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggagggata 60
Query: 68 actcaatacccacttggcaattagctgacatcttcaccagacctct 113
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcaatacccacttggcaattagctgacatcttcaccagacctct 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 29 caattagctgacatctttaccagacctct 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 106 agaggtctggtgaagatgtcagctaattg 78
>53177_ptc-miRf11355-akr:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 8 agaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggagggata 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaggtctggtaaagatgtcagctaattgagaagatgatgaaacaaactttggagggata 60
Query: 68 actcaatacccacttggcaattagctgacatcttcaccagacctct 113
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcaatacccacttggcaattagctgacatcttcaccagacctct 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 29 caattagctgacatctttaccagacctct 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 106 agaggtctggtgaagatgtcagctaattg 78
>54229_ptc-miRf12407-akr:pmrd
Length = 111
Score = 204 bits (103), Expect = 1e-53
Identities = 110/111 (99%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 6 caagaggtctggtaaagatgtcagctaattgagaagat-gatgaaacaaactttggaggg 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 caagaggtctggtaaagatgtcagctaattgagaagattgatgaaacaaactttggaggg 60
Query: 65 ataactcaatacccacttggcaattagctgacatcttcaccagacctctcg 115
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataactcaatacccacttggcaattagctgacatcttcaccagacctctcg 111
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 85 caattagctgacatcttcaccagacctct 113
||||||||||||||||| |||||||||||
Sbjct: 31 caattagctgacatctttaccagacctct 3
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 8 agaggtctggtaaagatgtcagctaattg 36
||||||||||| |||||||||||||||||
Sbjct: 109 agaggtctggtgaagatgtcagctaattg 81
