miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00779;MIR474;AARH01000593.1/34490-34595 3694:Populus
trichocarpa
Length = 106
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 19 ccttgggtctgactgcagcgcctgacccaagagtaatattt 59
|||||||||| |||||| ||| |||||||||||||||||||
Sbjct: 42 ccttgggtctaactgcaacgcttgacccaagagtaatattt 2
>RF00779;MIR474;AARH01004351.1/451832-451942 3694:Populus
trichocarpa
Length = 111
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 20 cttgggtctgactgcagcgcctgacccaagagtaatattt 59
||||||||| |||||| ||| |||||||||||||||||||
Sbjct: 43 cttgggtctaactgcaacgcttgacccaagagtaatattt 4
>RF00779;MIR474;AARH01000415.1/165191-165292 3694:Populus
trichocarpa
Length = 102
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 19 ccttgggtctgactgcagcgcctgacccaagagtaatattt 59
|||||||||| |||||| ||| ||||| |||||||||||||
Sbjct: 43 ccttgggtctaactgcaacgcttgacctaagagtaatattt 3
>RF00779;MIR474;AARH01001618.1/1118-1018 3694:Populus trichocarpa
Length = 101
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 7 tatatccaagaaccttgggtctgactgcagcgcctgacccaagagtaat 55
|||| |||||| |||||||||| ||||| ||| |||||||||||||||
Sbjct: 54 tatacccaagagccttgggtctagctgcaacgcttgacccaagagtaat 6
>RF00779;MIR474;AC214031.1/18532-18633 3694:Populus trichocarpa
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 73 taatattaaacttgcatgatccaagtttaa 102
||||||||||||||||| | ||||||||||
Sbjct: 102 taatattaaacttgcataacccaagtttaa 73
