miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 2 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 28
Query: 62 caggacccaagggtaatgggtcctgca 88
|||||||||||||||||||||||||||
Sbjct: 27 caggacccaagggtaatgggtcctgca 1
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 2 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 28
Query: 62 caggacccaagggtaatgggtcctgca 88
|||||||||||||||||||||||||||
Sbjct: 27 caggacccaagggtaatgggtcctgca 1
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 2 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 28
Query: 62 caggacccaagggtaatgggtcctgca 88
|||||||||||||||||||||||||||
Sbjct: 27 caggacccaagggtaatgggtcctgca 1
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 85.7 bits (43), Expect = 5e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 47 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgcag 89
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgcag 43
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 6 gaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcagg 65
||||||| ||||||| |||||| |||||| || | |||||||||||||||| ||||||||
Sbjct: 43 gaggacctaattctcatgggtcctgcgtcaagactcaattctcttgggtctggcgtcagg 102
Query: 66 acccaagg 73
||||||||
Sbjct: 103 acccaagg 110
>52780_ptc-miRf10958-akr:pmrd
Length = 95
Score = 61.9 bits (31), Expect = 7e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 42 aattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 88
||||||||| ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 44 aattctcttcggtctagcgtcaggacccaagggtgatgggtcatgca 90
>52012_ptc-miRf10190-akr:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 39 cccaattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgcag 89
|||||||||||||||||| | ||||| ||||||| |||||||||||||||
Sbjct: 75 cccaattctcttgggtctcccatcagggcccaaggctaatgggtcctgcag 25
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 8 ggacccaattctcttgggtct 28
|||||||||||||||||||||
Sbjct: 78 ggacccaattctcttgggtct 58
>53676_ptc-miRf11854-akr:pmrd
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtcctgca 88
||||||||||||| |||||||| ||||||||||||||||
Sbjct: 11 tgggtcttgcgtc-ggacccaatggtaatgggtcctgca 48
>53675_ptc-miRf11853-akr:pmrd
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtcctgca 88
||||||||||||| |||||||| ||||||||||||||||
Sbjct: 11 tgggtcttgcgtc-ggacccaatggtaatgggtcctgca 48
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 47 tcttgggtcttgcgtcaggacccaagggtaatgggtcct 85
||||||||| |||||||||| |||||| |||||||||||
Sbjct: 10 tcttgggtcatgcgtcaggatccaaggctaatgggtcct 48
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 40 ccaattctcttgggtcttgcgtcaggacccaagg 73
|||||||||||||||| |||| |||||||||||
Sbjct: 87 ccaattctcttgggtccagcgttaggacccaagg 120
>54156_ptc-miRf12334-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||| |||||||||||||||||| ||||||||
Sbjct: 11 tgggtcctgcgtcaggacccaagggcaatgggtc 44
>54155_ptc-miRf12333-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||||||||||||||||||||| ||||||||
Sbjct: 11 tgggtcttgcgtcaggacccaaggacaatgggtc 44
>53959_ptc-miRf12137-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||||||||||||||||||||| ||||||||
Sbjct: 82 tgggtcttgcgtcaggacccaaggacaatgggtc 49
>53373_ptc-miRf11551-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||| |||||||||||||||||| ||||||||
Sbjct: 44 tgggtcctgcgtcaggacccaagggcaatgggtc 11
>53372_ptc-miRf11550-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||||||||||||||||||||| ||||||||
Sbjct: 82 tgggtcttgcgtcaggacccaaggacaatgggtc 49
>53109_ptc-miRf11287-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||||||||||||||||||||| ||||||||
Sbjct: 11 tgggtcttgcgtcaggacccaaggacaatgggtc 44
>52558_ptc-miRf10736-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||| |||||||||||||||||| ||||||||
Sbjct: 57 tgggtcctgcgtcaggacccaagggcaatgggtc 90
>52557_ptc-miRf10735-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||||||||||||||||||||| ||||||||
Sbjct: 49 tgggtcttgcgtcaggacccaaggacaatgggtc 82
>52143_ptc-miRf10321-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtc 83
|||||| |||||||||||||||||| ||||||||
Sbjct: 40 tgggtcctgcgtcaggacccaagggcaatgggtc 7
>52476_ptc-miRf10654-akr:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 39 cccaattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgc 87
|||||||||||||||||| | |||||| | |||||||||| |||||||
Sbjct: 82 cccaattctcttgggtctggtatcaggatcaaagggtaatgagtcctgc 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 9 gacccaattctcttgggtct 28
||||||||||||||||||||
Sbjct: 84 gacccaattctcttgggtct 65
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 tcaggacccaagggtaatgggtcctgca 88
||||||||||||| ||||||||||||||
Sbjct: 62 tcaggacccaaggttaatgggtcctgca 89
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 52 ggtcttgcgtcaggacccaagggtaatgggtcctgc 87
|||| |||||||| |||||||| |||||||||||||
Sbjct: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgc 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 2 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 61
||||||||| ||||||||| ||||| || ||| | ||||||||||||||||| ||||
Sbjct: 34 tgcggaggaaccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgt 93
Query: 62 caggacc 68
||||||
Sbjct: 94 taggacc 100
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 52 ggtcttgcgtcaggacccaagggtaatgggtcctgc 87
|||| |||||||| |||||||| |||||||||||||
Sbjct: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgc 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 2 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 61
||||||||| ||||||||| ||||| || ||| | ||||||||||||||||| ||||
Sbjct: 34 tgcggaggaaccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgt 93
Query: 62 caggacc 68
||||||
Sbjct: 94 taggacc 100
>54348_ptc-miRf12526-akr:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 9 gacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcaggacc 68
||||||||||||||||| | || ||| | |||||||||||| ||||| | || ||| ||
Sbjct: 8 gacccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttaggtcc 67
Query: 69 caagggtaatgggtc 83
||| | |||||||||
Sbjct: 68 caacgctaatgggtc 82
>54238_ptc-miRf12416-akr:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tctcttgggtcttgcgtcaggacccaa 71
|||||| ||||||||||||||||||||
Sbjct: 50 tctcttaggtcttgcgtcaggacccaa 24
>52614_ptc-miRf10792-akr:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tctcttgggtcttgcgtcaggacccaa 71
|||||| ||||||||||||||||||||
Sbjct: 50 tctcttaggtcttgcgtcaggacccaa 24
>53244_ptc-miRf11422-akr:pmrd
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 46 ctcttgggtcttgcgtcaggacccaa 71
||||||||||||||||| ||||||||
Sbjct: 92 ctcttgggtcttgcgtctggacccaa 117
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 2 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtc 55
||||||||| ||||||||| ||||| || ||| | |||||||||||||||||
Sbjct: 27 tgcggaggaaccaattctcacgggtcctgtgtcaggacccaattctcttgggtc 80
>51960_ptc-miRf10138-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 aggacccaattctcttgggtct 28
||||||||||||||||||||||
Sbjct: 70 aggacccaattctcttgggtct 91
>52359_ptc-miRf10537-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 7e-05
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 39 cccaattctcttgggtcttgcgtcaggacccaagggtaatgggtcctgc 87
||||||||| || |||| ||| |||||| ||||||||||||||||||
Sbjct: 77 cccaattcttttaggtcccgcggcaggacttaagggtaatgggtcctgc 29
>52337_ptc-miRf10515-akr:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 9 gacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcaggacc 68
|||||| ||| |||||||| ||| | || |||||||||||| ||| ||||||| ||||
Sbjct: 78 gacccatttcgcttgggtcctgccttcagacccaattctcttaggtactgcgtcatgacc 19
Query: 69 caagg 73
|||||
Sbjct: 18 caagg 14
>52276_ptc-miRf10454-akr:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 aggacccaattctcttgggtc 27
|||||||||||||||||||||
Sbjct: 63 aggacccaattctcttgggtc 83
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 50 tgggtcttgcgtcaggacccaagggtaatgggtcctg 86
|||||| ||||| ||||||||| | ||||||||||||
Sbjct: 122 tgggtcctgcgttaggacccaatgctaatgggtcctg 86
>54192_ptc-miRf12370-akr:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 49 ttgggtcttgcgtcaggacccaag 72
||||||| ||||||||||||||||
Sbjct: 131 ttgggtcctgcgtcaggacccaag 108
>52942_ptc-miRf11120-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7 aggacccaattctcttgggtcttg 30
||||||||||| ||||||||||||
Sbjct: 31 aggacccaattttcttgggtcttg 8
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 38 tcccaattctcttgggtcttgcgtcaggaccc 69
||||||||||||||| || |||||||| ||||
Sbjct: 84 tcccaattctcttggatcctgcgtcagaaccc 53
>52208_ptc-miRf10386-akr:pmrd
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 40 ccaattctcttgggtcttgcgtcaggac 67
||||| |||||||||| |||||||||||
Sbjct: 46 ccaatgctcttgggtcctgcgtcaggac 73
