miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 103 bits (52), Expect = 3e-23
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 6 ggtcttgcgtcaggacccaagggtaatgggtcctgcagaggacctaattctcatgggtcc 65
|||| |||||||| |||||||| ||||||||||||| ||||| | |||||||| ||||||
Sbjct: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcggaggaaccaattctcacgggtcc 60
Query: 66 tgcgtcaagactcaattctcttgggtctggcgtcaggacc 105
|| |||| ||| ||||||||||||||| ||||| ||||||
Sbjct: 61 tgtgtcaggacccaattctcttgggtccggcgttaggacc 100
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 103 bits (52), Expect = 3e-23
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 6 ggtcttgcgtcaggacccaagggtaatgggtcctgcagaggacctaattctcatgggtcc 65
|||| |||||||| |||||||| ||||||||||||| ||||| | |||||||| ||||||
Sbjct: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcggaggaaccaattctcacgggtcc 60
Query: 66 tgcgtcaagactcaattctcttgggtctggcgtcaggacc 105
|| |||| ||| ||||||||||||||| ||||| ||||||
Sbjct: 61 tgtgtcaggacccaattctcttgggtccggcgttaggacc 100
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 85.7 bits (43), Expect = 6e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgcag 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgcag 89
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 43 gaggacctaattctcatgggtcctgcgtcaagactcaattctcttgggtctggcgtcagg 102
||||||| ||||||| |||||| |||||| || | |||||||||||||||| ||||||||
Sbjct: 6 gaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcagg 65
Query: 103 acccaagg 110
||||||||
Sbjct: 66 acccaagg 73
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 1
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 43 gaggacctaattctcatgggtcctgcgtcaagactcaattctcttgggtctggcgtcagg 102
||||||| ||||||| |||||| |||||| || | |||||||||||||||| ||||||||
Sbjct: 83 gaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcagg 24
Query: 103 acccaagg 110
||||||||
Sbjct: 23 acccaagg 16
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 1
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 43 gaggacctaattctcatgggtcctgcgtcaagactcaattctcttgggtctggcgtcagg 102
||||||| ||||||| |||||| |||||| || | |||||||||||||||| ||||||||
Sbjct: 83 gaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcagg 24
Query: 103 acccaagg 110
||||||||
Sbjct: 23 acccaagg 16
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 1
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 43 gaggacctaattctcatgggtcctgcgtcaagactcaattctcttgggtctggcgtcagg 102
||||||| ||||||| |||||| |||||| || | |||||||||||||||| ||||||||
Sbjct: 83 gaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcagg 24
Query: 103 acccaagg 110
||||||||
Sbjct: 23 acccaagg 16
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 20 acccaagggtaatgggtcctgcagaggacctaattctcatgggtcctgcgtcaagactca 79
|||||||| ||||||||||||| ||||| | |||||||| |||||||| |||| ||| ||
Sbjct: 8 acccaaggctaatgggtcctgcggaggaaccaattctcacgggtcctgtgtcaggaccca 67
Query: 80 attctcttgggtctggcg 97
||||||||||||| ||||
Sbjct: 68 attctcttgggtccggcg 85
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 77.8 bits (39), Expect = 2e-15
Identities = 94/111 (84%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgcag-aggacctaattctcat 59
||||||||| |||||||||| |||||| ||||||||||| | ||||| ||| || | |
Sbjct: 10 tcttgggtcatgcgtcaggatccaaggctaatgggtcctacgtcaggacttaactcgctt 69
Query: 60 gggtcctgcgtcaagactcaattctcttgggtctggcgtcaggacccaagg 110
||||||||||||| || ||||||||||||||| |||| |||||||||||
Sbjct: 70 gggtcctgcgtcaggatccaattctcttgggtccagcgttaggacccaagg 120
>53676_ptc-miRf11854-akr:pmrd
Length = 95
Score = 63.9 bits (32), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtcctgcagaggacctaattctcatgggt 63
||||||||||||| |||||||| |||||||||||||||| |||||| || || ||||||
Sbjct: 11 tgggtcttgcgtc-ggacccaatggtaatgggtcctgcacaggacccaagtccaatgggt 69
Query: 64 cctg 67
||||
Sbjct: 70 cctg 73
>53675_ptc-miRf11853-akr:pmrd
Length = 95
Score = 63.9 bits (32), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtcctgcagaggacctaattctcatgggt 63
||||||||||||| |||||||| |||||||||||||||| |||||| || || ||||||
Sbjct: 11 tgggtcttgcgtc-ggacccaatggtaatgggtcctgcacaggacccaagtccaatgggt 69
Query: 64 cctg 67
||||
Sbjct: 70 cctg 73
>52012_ptc-miRf10190-akr:pmrd
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgcagaggacc 49
|||||||||| | ||||| ||||||| |||||||||||||||||||||
Sbjct: 67 tcttgggtctcccatcagggcccaaggctaatgggtcctgcagaggacc 19
>54156_ptc-miRf12334-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||| |||||||||||||||||| ||||||||
Sbjct: 11 tgggtcctgcgtcaggacccaagggcaatgggtc 44
>54155_ptc-miRf12333-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||||||||||||||||||||| ||||||||
Sbjct: 11 tgggtcttgcgtcaggacccaaggacaatgggtc 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 tgggtctggcgtcaggacccaagg 110
||||||| ||||||||||||||||
Sbjct: 11 tgggtcttgcgtcaggacccaagg 34
>53959_ptc-miRf12137-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||||||||||||||||||||| ||||||||
Sbjct: 82 tgggtcttgcgtcaggacccaaggacaatgggtc 49
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 87 tgggtctggcgtcaggacccaagg 110
||||||| ||||||||||||||||
Sbjct: 82 tgggtcttgcgtcaggacccaagg 59
>53373_ptc-miRf11551-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||| |||||||||||||||||| ||||||||
Sbjct: 44 tgggtcctgcgtcaggacccaagggcaatgggtc 11
>53372_ptc-miRf11550-akr:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||||||||||||||||||||| ||||||||
Sbjct: 82 tgggtcttgcgtcaggacccaaggacaatgggtc 49
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 87 tgggtctggcgtcaggacccaagg 110
||||||| ||||||||||||||||
Sbjct: 82 tgggtcttgcgtcaggacccaagg 59
>53109_ptc-miRf11287-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||||||||||||||||||||| ||||||||
Sbjct: 11 tgggtcttgcgtcaggacccaaggacaatgggtc 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 tgggtctggcgtcaggacccaagg 110
||||||| ||||||||||||||||
Sbjct: 11 tgggtcttgcgtcaggacccaagg 34
>52780_ptc-miRf10958-akr:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1 tcttgggtcttgcgtcaggacccaagggtaatgggtcctgca 42
|||| ||||| |||||||||||||||||| ||||||| ||||
Sbjct: 49 tcttcggtctagcgtcaggacccaagggtgatgggtcatgca 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 aattctcttgggtctggcgtcaggacccaagg 110
||||||||| ||||| ||||||||||||||||
Sbjct: 44 aattctcttcggtctagcgtcaggacccaagg 75
>52558_ptc-miRf10736-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||| |||||||||||||||||| ||||||||
Sbjct: 57 tgggtcctgcgtcaggacccaagggcaatgggtc 90
>52557_ptc-miRf10735-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||||||||||||||||||||| ||||||||
Sbjct: 49 tgggtcttgcgtcaggacccaaggacaatgggtc 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 tgggtctggcgtcaggacccaagg 110
||||||| ||||||||||||||||
Sbjct: 49 tgggtcttgcgtcaggacccaagg 72
>52143_ptc-miRf10321-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtc 37
|||||| |||||||||||||||||| ||||||||
Sbjct: 40 tgggtcctgcgtcaggacccaagggcaatgggtc 7
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 tcaggacccaagggtaatgggtcctgca 42
||||||||||||| ||||||||||||||
Sbjct: 62 tcaggacccaaggttaatgggtcctgca 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 44 aggacctaattctcatgggtcctgcgtcaa 73
|||||||||||||| ||||||| |||||||
Sbjct: 8 aggacctaattctcttgggtccggcgtcaa 37
>52476_ptc-miRf10654-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 68 cgtcaagactcaattctcttgggtctgg 95
||||||||| ||||||||||||||||||
Sbjct: 90 cgtcaagacccaattctcttgggtctgg 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 15 tcaggacccaagggtaatgggtcctgcagagg 46
|||||||||||| ||||||||||||| ||||
Sbjct: 32 tcaggacccaagactaatgggtcctgcggagg 1
>54238_ptc-miRf12416-akr:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 63 tcctgcgtcaagactcaattctcttgggtctggcgtcaggacc 105
|||||||||| ||| |||| ||||||||||| |||||| ||||
Sbjct: 124 tcctgcgtcatgacccaatgctcttgggtctagcgtcaagacc 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 tcttgggtcttgcgtcaggacccaa 25
|||| ||||||||||||||||||||
Sbjct: 48 tcttaggtcttgcgtcaggacccaa 24
>52614_ptc-miRf10792-akr:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 63 tcctgcgtcaagactcaattctcttgggtctggcgtcaggacc 105
|||||||||| ||| |||| ||||||||||| |||||| ||||
Sbjct: 124 tcctgcgtcatgacccaatgctcttgggtctagcgtcaagacc 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 tcttgggtcttgcgtcaggacccaa 25
|||| ||||||||||||||||||||
Sbjct: 48 tcttaggtcttgcgtcaggacccaa 24
>52793_ptc-miRf10971-akr:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 67 gcgtcaagactcaattctcttgggtc 92
||||||||||||| ||||||||||||
Sbjct: 33 gcgtcaagactcatttctcttgggtc 8
>53244_ptc-miRf11422-akr:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tcttgggtcttgcgtcaggacccaa 25
|||||||||||||||| ||||||||
Sbjct: 93 tcttgggtcttgcgtctggacccaa 117
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 4 tgggtcttgcgtcaggacccaagggtaatgggtcctg 40
|||||| ||||| ||||||||| | ||||||||||||
Sbjct: 122 tgggtcctgcgttaggacccaatgctaatgggtcctg 86
>54192_ptc-miRf12370-akr:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 3 ttgggtcttgcgtcaggacccaag 26
||||||| ||||||||||||||||
Sbjct: 131 ttgggtcctgcgtcaggacccaag 108
