miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53724_ptc-miRf11902-akr:pmrd
Length = 130
Score = 190 bits (96), Expect = 2e-49
Identities = 120/128 (93%)
Strand = Plus / Plus
Query: 1 ggtgattaaatgccgacggcattaccgacggataatatacgtcggtattacacagagagt 60
|||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct: 1 ggtgattaaatgccgacggcattaccgacgaataatatccgtcggtatttcacagagagt 60
Query: 61 tgcaacaaaattacaagccatgccataattaccgacggattttccgtcggcaatgccgtc 120
||||||| |||||| |||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct: 61 tgcaacacaattaccagccatgccataattaccgatggaatttccgtcggtaatgccgtc 120
Query: 121 ggtaatta 128
||||||||
Sbjct: 121 ggtaatta 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccgacggcattaccgacgga 32
||||||||||||||||||||
Sbjct: 122 ccgacggcattaccgacgga 103
>52329_ptc-miRf10507-akr:pmrd
Length = 124
Score = 182 bits (92), Expect = 4e-47
Identities = 110/116 (94%)
Strand = Plus / Minus
Query: 13 ccgacggcattaccgacggataatatacgtcggtattacacagagagttgcaacaaaatt 72
|||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 117 ccgacggcatcaccgacggataatatccgtcggtattacacagagagttgcaataaaatt 58
Query: 73 acaagccatgccataattaccgacggattttccgtcggcaatgccgtcggtaatta 128
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct: 57 acaagccatgccataattaccgacggattttccgtcggtaatgtcgtcggcaatta 2
>54081_ptc-miRf12259-akr:pmrd
Length = 131
Score = 153 bits (77), Expect = 4e-38
Identities = 108/117 (92%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 13 ccgacggcattaccgacggataatatacgtcggtattacacagagagttgcaacaaaa-t 71
|||| ||||||||||||||||| ||| |||||||| | |||||||||||||||||||| |
Sbjct: 13 ccgatggcattaccgacggatagtatccgtcggtaattcacagagagttgcaacaaaaat 72
Query: 72 tacaagccatgccataattaccgacggattttccgtcggcaatgccgtcggtaatta 128
||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 73 tacaagccatgccatcattaccgacgggttttccgtcggtaatgccgtcggtaatta 129
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccgacggcattaccgacgga 32
||||||||||||||||||||
Sbjct: 123 ccgacggcattaccgacgga 104
>52184_ptc-miRf10362-akr:pmrd
Length = 122
Score = 143 bits (72), Expect = 4e-35
Identities = 105/116 (90%)
Strand = Plus / Plus
Query: 13 ccgacggcattaccgacggataatatacgtcggtattacacagagagttgcaacaaaatt 72
||||||| ||||||||||||||| | ||||||||||||| ||||| |||||||||||||
Sbjct: 7 ccgacggacttaccgacggataatctccgtcggtattacatagagatttgcaacaaaatt 66
Query: 73 acaagccatgccataattaccgacggattttccgtcggcaatgccgtcggtaatta 128
||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct: 67 acaagccatgccataattaccgacggattggtcgtcggtaatgccatcggtaatta 122
>53407_ptc-miRf11585-akr:pmrd
Length = 90
Score = 89.7 bits (45), Expect = 5e-19
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 24 accgacggataatatacgtcggtattacacagagagttgcaacaaaattacaagccatgc 83
||||||||||||| | |||||||||| ||||||||||||| | | ||||| ||||||||
Sbjct: 90 accgacggataatttccgtcggtatttcacagagagttgccaaacaattatcagccatgc 31
Query: 84 cataattaccgacggat 100
|||||||||||||||||
Sbjct: 30 cataattaccgacggat 14
>53162_ptc-miRf11340-akr:pmrd
Length = 90
Score = 87.7 bits (44), Expect = 2e-18
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 24 accgacggataatatacgtcggtattacacagagagttgcaacaaaattacaagccatgc 83
||||||||| | ||| |||||||||| ||||||||||||| | | |||||| ||||||||
Sbjct: 90 accgacggacattatccgtcggtatttcacagagagttgccaaacaattaccagccatgc 31
Query: 84 cataattaccgacgga 99
||||||||||||||||
Sbjct: 30 cataattaccgacgga 15
>52509_ptc-miRf10687-akr:pmrd
Length = 116
Score = 87.7 bits (44), Expect = 2e-18
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 22 ttaccgacggataatatacgtcggtattacacagagagttgcaacaaaattacaagccat 81
||||||||||||| | | |||||||||| ||||||||||||| | | |||||| ||||||
Sbjct: 104 ttaccgacggatactgtccgtcggtatttcacagagagttgccaaacaattaccagccat 45
Query: 82 gccataattaccgacg 97
||||||||||||||||
Sbjct: 44 gccataattaccgacg 29
>52162_ptc-miRf10340-akr:pmrd
Length = 131
Score = 61.9 bits (31), Expect = 1e-10
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 22 ttaccgacggataatatacgtcggtattacacagagagttgcaacaaaattacaagccat 81
|||||||||||||| || |||||||||| ||||||| |||| | | |||||| | | ||
Sbjct: 131 ttaccgacggataaaatccgtcggtatttcacagagggttggcaaacaattactaccgat 72
Query: 82 gccataattaccgac 96
|||||||||||||||
Sbjct: 71 gccataattaccgac 57
>53276_ptc-miRf11454-akr:pmrd
Length = 141
Score = 58.0 bits (29), Expect = 2e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 40 cgtcggtattacacagagagttgcaacaaaattacaagcc-atgccataattaccgacgg 98
|||||||||| |||||||||||| || |||||||| |||| ||||| ||||||||||||
Sbjct: 119 cgtcggtatttcacagagagttggaaaaaaattacgagcctgtgccacaattaccgacgg 60
Query: 99 a 99
|
Sbjct: 59 a 59
>52931_ptc-miRf11109-akr:pmrd
Length = 142
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 40 cgtcggtattacacagagagttgcaacaaaattac 74
|||||||||| ||||||||||||||| ||||||||
Sbjct: 117 cgtcggtatttcacagagagttgcaaaaaaattac 83
>53769_ptc-miRf11947-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 87 aattaccgacggattttccgtcggcaatgccgtcggtaatta 128
||||||||||||| ||||||||| ||| |||||||||||||
Sbjct: 43 aattaccgacggaagttccgtcggtaattccgtcggtaatta 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 87 aattaccgacggattttccgtcggcaatgccgtcggtaa 125
||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 71 aattaccgacggaacttccgtcggtaattccgtcggtaa 33
>54221_ptc-miRf12399-akr:pmrd
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 89 ttaccgacggattttccgtcggcaatgccgtcggtaa 125
||||||||||| |||||||||| ||| ||||||||||
Sbjct: 113 ttaccgacggaatttccgtcggtaattccgtcggtaa 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 87 aattaccgacggattttccgtcggcaatgccgtcggtaatt 127
|||||||||||||||| ||| ||| | | ||||||||||||
Sbjct: 127 aattaccgacggatttaccgacggaatttccgtcggtaatt 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 87 aattaccgacggattttccgtcggcaatgccgtcggtaatt 127
||||||||||||| ||||||||| || ||||||||||||
Sbjct: 87 aattaccgacggaaattccgtcggtaaatccgtcggtaatt 127
>54170_ptc-miRf12348-akr:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 87 aattaccgacggattttccgtcggcaatgccgtcggtaatt 127
||||||||||||| ||||||| || ||| ||||||||||||
Sbjct: 86 aattaccgacggaatttccgttggtaattccgtcggtaatt 126
>53318_ptc-miRf11496-akr:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 89 ttaccgacggattttccgtcggcaatgccgtcggtaatta 128
||||||| ||| |||||||||| ||| |||||||||||||
Sbjct: 79 ttaccgatggaatttccgtcggtaattccgtcggtaatta 118
>52939_ptc-miRf11117-akr:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 87 aattaccgacggattttccgtcggcaatgccgtcggtaa 125
||||||||||||| |||||||||| || ||||||||||
Sbjct: 65 aattaccgacggaatttccgtcggtaaatccgtcggtaa 27
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 89 ttaccgacggattttccgtcggcaatgccgtcggtaatt 127
|||||||||||||| ||| ||| ||| ||||||||||||
Sbjct: 27 ttaccgacggatttaccgacggaaattccgtcggtaatt 65
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 89 ttaccgacggattttccgtcggcaatgccgtcggtaatt 127
||||||||||| ||||||||| ||| ||||||||||||
Sbjct: 39 ttaccgacggaaattccgtcggtaattccgtcggtaatt 77
>54028_ptc-miRf12206-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 87 aattaccgacgga-ttttccgtcggcaatgccgtcggtaatt 127
||||||||||||| ||||||||||| | | ||||||||||||
Sbjct: 61 aattaccgacggaattttccgtcggtatttccgtcggtaatt 20
>52785_ptc-miRf10963-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 102 ttccgtcggcaatgccgtcggtaatt 127
||||||||| ||||||||||||||||
Sbjct: 45 ttccgtcggtaatgccgtcggtaatt 70
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccgacggcattaccgacgga 32
||||||||||||||||||||
Sbjct: 65 ccgacggcattaccgacgga 46
>54117_ptc-miRf12295-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 88 attaccgacggattttccgtcggcaatgccgtcggtaatta 128
|||||| | ||| |||||||||| ||| |||||||||||||
Sbjct: 53 attaccaatggaatttccgtcggtaattccgtcggtaatta 93
>53595_ptc-miRf11773-akr:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 91 accgacggattttccgtcggcaatgccgtcggt 123
|||||||| ||||||||||| |||||||||||
Sbjct: 59 accgacggcttttccgtcggtgatgccgtcggt 27
>53508_ptc-miRf11686-akr:pmrd
Length = 75
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 88 attaccgacggattttccgtcggcaatgccgtcggtaatta 128
|||||||| ||| | |||||||| ||| |||||||||||||
Sbjct: 32 attaccgatggaatgtccgtcggtaattccgtcggtaatta 72
>52757_ptc-miRf10935-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 88 attaccgacggattttccgtcggcaatgccgtcggtaatta 128
|||||||| ||| |||||||||| || |||||||||||||
Sbjct: 60 attaccgatggaatttccgtcggtaagtccgtcggtaatta 100
>54337_ptc-miRf12515-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 88 attaccgacggattttccgtcggcaatgccgtcggtaatt 127
|||||||||||| |||||| || ||| ||||||||||||
Sbjct: 38 attaccgacggaaattccgttggtaattccgtcggtaatt 77
>54160_ptc-miRf12338-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 13 ccgacggcattaccgacggataat 36
|||||||| |||||||||||||||
Sbjct: 71 ccgacggctttaccgacggataat 48
>54072_ptc-miRf12250-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 ccgacggcattaccgacgga 32
||||||||||||||||||||
Sbjct: 11 ccgacggcattaccgacgga 30
>54064_ptc-miRf12242-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 13 ccgacggcattaccgacggataat 36
|||||||| |||||||||||||||
Sbjct: 71 ccgacggctttaccgacggataat 48
>54040_ptc-miRf12218-akr:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 ccgacggcattaccgacgga 32
||||||||||||||||||||
Sbjct: 27 ccgacggcattaccgacgga 46
>54017_ptc-miRf12195-akr:pmrd
Length = 70
Score = 40.1 bits (20), Expect = 4e-04
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 87 aattaccgacgga-ttttccgtcggcaatgccgtcggtaa 125
||||||||||||| ||||||||||| ||| |||| |||||
Sbjct: 49 aattaccgacggaattttccgtcggtaattccgttggtaa 10
>53806_ptc-miRf11984-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 89 ttaccgacgga-ttttccgtcggcaatgccgtcggtaatt 127
||||||||||| ||||||||||| ||| || |||||||||
Sbjct: 59 ttaccgacggaattttccgtcggtaattccatcggtaatt 20
>52722_ptc-miRf10900-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 101 tttccgtcggcaatgccgtcggtaatta 128
|||||||||| ||| |||||||||||||
Sbjct: 56 tttccgtcggtaattccgtcggtaatta 83
>52721_ptc-miRf10899-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 101 tttccgtcggcaatgccgtcggtaatta 128
|||||||||| ||| |||||||||||||
Sbjct: 56 tttccgtcggtaattccgtcggtaatta 83
>52528_ptc-miRf10706-akr:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccgacggcattaccgacgga 32
||||||||||||||||||||
Sbjct: 115 ccgacggcattaccgacgga 96
