miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53303_ptc-miRf11481-akr:pmrd
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 60
Query: 61 gcatgacttagcagccagacccaacagcgttgggtccaacagccaagccagacccaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcatgacttagcagccagacccaacagcgttgggtccaacagccaagccagacccaatag 120
>54098_ptc-miRf12276-akr:pmrd
Length = 125
Score = 208 bits (105), Expect = 7e-55
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 46
Query: 61 gcatgacttagcagccagacccaacagcgttgggtccaacagcca 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gcatgacttagcagccagacccaacagcgttgggtccaacagcca 1
>54097_ptc-miRf12275-akr:pmrd
Length = 125
Score = 208 bits (105), Expect = 7e-55
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ctattgggtgctgctgggcagcaagacccaacgttgttgctccttttagaagtgttttgg 46
Query: 61 gcatgacttagcagccagacccaacagcgttgggtccaacagcca 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gcatgacttagcagccagacccaacagcgttgggtccaacagcca 1
>53243_ptc-miRf11421-akr:pmrd
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 5 tgggtgctgctgggcagcaagacccaac-gttgttgctccttttagaagtgttttgggc 62
||||||||||||||||||| |||||||| | | ||||||||| ||||||||||||||
Sbjct: 91 tgggtgctgctgggcagcaggacccaactctactggctccttttggaagtgttttgggc 33
>52531_ptc-miRf10709-akr:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 39 gctccttttagaagtgttttgggcatgacttagca 73
||||||||| ||||||||||||| ||||||||||
Sbjct: 68 gctcctttttgaagtgttttgggtctgacttagca 34
